Gene detail

Detail information of GWHGAAZE020498

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004506954.1	1.9831E-104	PREDICTED: signal recognition particle 54 kDa protein 2-like [Cicer arietinum]
COG	YP_564908.1	1E-68	signal recognition particle protein Srp54
Swissprot	tr\|P49972\|SR542_SOLLC	8E-102	Signal recognition particle 54 kDa protein 2
trEMBL	tr\|I1MCE2\|I1MCE2_SOYBN	4E-104	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G00930.1}
TAIR10	AT1G48900.2	4E-86	Signal recognition particle, SRP54 subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	6772208	6781152	+
GWHAAZE00000006	mRNA	6772208	6781152	+
GWHAAZE00000006	exon	6772208	6772477	+
GWHAAZE00000006	exon	6773633	6773732	+
GWHAAZE00000006	exon	6773999	6774149	+
GWHAAZE00000006	exon	6775373	6775457	+
GWHAAZE00000006	exon	6776115	6776163	+
GWHAAZE00000006	exon	6776291	6776535	+
GWHAAZE00000006	exon	6776616	6776764	+
GWHAAZE00000006	exon	6779233	6779333	+
GWHAAZE00000006	exon	6779468	6779625	+
GWHAAZE00000006	exon	6780336	6780503	+
GWHAAZE00000006	exon	6781090	6781152	+
GWHAAZE00000006	CDS	6772208	6772477	+
GWHAAZE00000006	CDS	6773633	6773732	+
GWHAAZE00000006	CDS	6773999	6774149	+
GWHAAZE00000006	CDS	6775373	6775457	+
GWHAAZE00000006	CDS	6776115	6776163	+
GWHAAZE00000006	CDS	6776291	6776535	+
GWHAAZE00000006	CDS	6776616	6776764	+
GWHAAZE00000006	CDS	6779233	6779333	+
GWHAAZE00000006	CDS	6779468	6779625	+
GWHAAZE00000006	CDS	6780336	6780503	+
GWHAAZE00000006	CDS	6781090	6781152	+

Transcript Sequence
>GWHTAAZE020522 TATTTCTCAGAAGAGATCGATCATATAAGATCAACCAAAATGGTTTTGGCAGAGTTGGGGGGGAGCATAACACGTGCTCTCCAGCAGATGACAAGTACGACGATTATCGATGAGAGGGTTCTCAGTGATTGTCTCAAGGAGATCAGTCGTGCTCTACTTCAGTCCGATGTTCAGTTTAAACTCGTTCATGATATGCAGGCCAACATTAAGACAATCGTCAATATCAAGGATCTTGCTGCTGGGCACAATAAACGGAAGATCATCCAAGAGGCTATATATAACGAGATATGCAAGATGCTGGATCCTGGGAAGCCTTCTTTCATCCCGAAGAAAGGGAAAACAAGTGTAGTCATGTTTGTAGGTTTGCAAGGGTCTGGGAAAACCACATGTACAAAATATGCCTTTTACCACCAGAGGAAGGGCTGGAAACCTGCTTTGGTATGTGCAGATACATTCAGAGCTGGTGCTTTTGATCAGTTGAAGCAAAATGCCACTAAAGCTAAAATTCCGTTCTATGGAAGTTTAAAATCCTTAGCATCCCCTTTTGATTTGAAATTTCTCCTTGAGCCATTCCTCATTGCCGCTGGGATGGGAAAATTGGACAAGGAGGGAATAGCAGAACGGGAAAAATTGAGGGGTTCGAGGGAAACAAAGGGCATAATAGAAAAAGCTAGCAACATCCACCCCCTTCCTTTGTCGTATGCTTATTATTTGGAGCTCAAATTTGTATACCTGGTTTTGGCCAACAGCTATATGGAGTCGGATCCTGCAAAAATTGCAGTAGAAGGTGTGGAAAGATTCAAGAAGGAAAATTGTGATCTTATAATTGTTGATACCAGTGGCCGCCACAAACAGGAGGTATCTCTCTTCGAGGAAATGCGTCAAGTTTCAGAGGCAACGAAACCGGATCTTGTTATTTTCGTAATGGATAGCAGCATTGGTCAAGCTGCATTCGATCAAGCTCAAGCATTCAAGCATAGTGTTGCAGTCGGAGCTGTGATTGTTACTAAGATGGATGGTCATGCAAAAGGAGGCGGTGCTCTTAGTGCAGTAGCAGCAACAAAGAGTCCAGTCATATTTATTGGAACTGGAGAGCATATGGATGAGTTTGAAGTTTTTGATGTTGAACCATTTGTCAGGCGCCTTTTAGGTATGGGCAACTTGTCTGGACTCGTGGACAAAATGCAAGAGGTTGTCCCAATGGAACAACAGCCTGAGCTTGTTGAAAAGATTGCAGAAGGATTGACCTTGAGGACTTGGTACGAACTGTTGCAATACTCACTCAAGATTGGTCCGATTGACGACCAGAGCCTCTCCCTCTCTCCGTGTCGGCTTTTGTCTCCAACAACCGCACCGGCACACCCACACCTCCTCCTCCATCTCGGGCCTCCTCTGTCAGTCCTCGACGCCGTTCCTCCTCCACATAGACGCCGGCCATCGGCCATCCTCCACATCCACGCCGGTCATCCTCCACCGGCCAAGGTTTGTGATTATATTGAATCAATTTTTCCTCTTCATCTTAAATCCTCAGATTCCTAG

Network for GWHGAAZE020498

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02881.20	SRP54_N	19	95	2.40E-13
PF00448.23	SRP54	115	174	1.70E-19
PF00448.23	SRP54	249	384	6.20E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03106	SRP54, ffh	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.550
	SRR3591706	second leaf	1.512
	SRR3591707	mature leaf	2.055
	SRR3591708	Shoot apex	2.206
	SRR3591709	Stem	1.273
	SRR3591710	White floral bud	4.386
	SRR3591711	White flower	4.929
	SRR3591712	Green floral bud	4.150
	SRR3591713	Yellow flower	4.153
SRP173429	SRR8316895	Juvenile bud stage	4.086
	SRR8316896	Juvenile bud stage	4.689
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	2.391
	SRR8316900	Third green stage	4.044
	SRR8316901	Third green stage	3.557
	SRR8316898	Complete white stage	1.277
	SRR8316899	Complete white stage	5.849
	SRR8316903	Complete white stage	4.338
	SRR8316902	Silver flowering stage	2.218
	SRR8316904	Silver flowering stage	4.089
	SRR8316905	Silver flowering stage	1.657
	SRR8316906	Gold flowering stage	4.652
	SRR8316907	Gold flowering stage	4.359
	SRR8316908	Gold flowering stage	1.730
SRP132670	SRR6706286	Control	7.640
	SRR6706287	Light intensity 50%	7.330
	SRR6706288	Light intensity 20%	7.469
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.850
	CNS0095593	Slightly white alabastrum(diploid) 2	1.933
	CNS0095594	Slightly white alabastrum(diploid) 3	1.755
	CNS0095595	Whole white alabastrum(diploid) 2	2.628
	CNS0095596	Whole white alabastrum(diploid) 3	3.687
	CNS0095597	Whole white alabastrum(diploid) 4	2.624
	CNS0095598	Silvery flower (diploied) 1	1.942
	CNS0095599	Silvery flower (diploied) 2	2.052
	CNS0095600	Silvery flower (diploied) 3	3.759
	CNS0095601	Golden flower (diploid) 1	2.318
	CNS0095602	Golden flower (diploid) 2	3.526
	CNS0095603	Golden flower (diploid) 3	3.752
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.022
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.042
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	7.240
	CRR073298	Stem 2	6.028
	CRR073299	Stem 3	1.637
	CRR073300	Leaf 1	7.384
	CRR073301	Leaf 2	5.915
	CRR073302	Leaf 3	1.612
	CRR073303	Juvenile bud 1	2.359
	CRR073304	Juvenile bud 2	1.314
	CRR073305	Juvenile bud 3	1.497
	CRR073306	Third green 1	1.463
	CRR073307	Third green 2	1.541
	CRR073308	Third green 3	1.212
	CRR073309	Second white 1	0.753
	CRR073310	Second white 2	1.936
	CRR073311	Second white 3	1.125
	CRR073312	Silver flowering 1	1.393
	CRR073313	Silver flowering 2	0.729
	CRR073314	Silver flowering 3	1.119
	CRR073315	Gold flowering 1	2.088
	CRR073316	Gold flowering 2	3.500
	CRR073317	Gold flowering 3	2.079
	CRR073318	Tawny withering 1	1.629
	CRR073319	Tawny withering 2	2.019
	CRR073320	Tawny withering 3	1.533