Gene detail

Detail information of GWHGAAZE020452

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092047.1	4.5187E-174	PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like [Sesamum indicum]
Swissprot	tr\|P93227\|FNTA_SOLLC	2E-169	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
trEMBL	tr\|A0A067L328\|A0A067L328_JATCU	1E-173	Uncharacterized protein {ECO:0000313\|EMBL:KDP42807.1}
TAIR10	AT3G59380.1	4E-119	farnesyltransferase A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	5645980	5651128	-
GWHAAZE00000006	mRNA	5645980	5651128	-
GWHAAZE00000006	exon	5645980	5646396	-
GWHAAZE00000006	exon	5647064	5647159	-
GWHAAZE00000006	exon	5647943	5648063	-
GWHAAZE00000006	exon	5648684	5648793	-
GWHAAZE00000006	exon	5650883	5651128	-
GWHAAZE00000006	CDS	5650883	5651128	-
GWHAAZE00000006	CDS	5648684	5648793	-
GWHAAZE00000006	CDS	5647943	5648063	-
GWHAAZE00000006	CDS	5647064	5647159	-
GWHAAZE00000006	CDS	5645980	5646396	-

Transcript Sequence
>GWHTAAZE020474 ATGGACTCGTCGGATGAAGATGAACAACAACAGAGGAGGATACCCATCAGTCAAAGATCGGAGTGGTCGGACGTCACTCCCGTCCCGCAAAACGACGGTCCGAACCCGGTGGTGCCGATATCGTACACGGTAGAGTTCGCGGAGACTATGGACTACTTCCGAGCCGTTTACTTAGCAGATGAGCGTTCCCCTCGTGCTCTTCTCCTCACTGCCGAAGCCATCGGCTTCAATCCCGGCAATTACACCGTATGGCAATTTAGGCGTCTAATACTTGAGGCACTCAATGCTGACTTGCACAAGGAATTGGATTTTGTTGATCACATTGCCTCCGATAACTCTAAAAACTATCAGATTTGGCATCATAGGCGGTGGGTTGCTGAGAAACTGGGATCTGAAGCTATTATTGGTGAGCTTGAGTTCACTAAGAAGATTTTCTCCAATGATGCTAAAAATTATCATGCCTGGTCTCATAGGCAGTGGGTTCTTCAGGCTCTAGGAGGTTGGGAAAATGAACTTGCCTATTGCCATAAACTCCTTGAAGAGGATATTTTCAACAATTCTGCTTGGAATCAGAGATACTTTGTCATAACAAGATCCCCTCTACTGGGTGGCCTAGAGGCCATGAGAAAATCAGAAGTAAGCTACGCAGTTGAAGCCATTACAGCCAAACCCGAGAACGAAAGCCCATGGAGATACCTTAGAGGCCTCTACAAAGATGACCCAAAATCTTTGATAAGCGATCCTCAGATCTCTTCAATATGTTTGAAAATTTTGAATGACAAATGCAACCATAGATTTGCTCTGAGCATGCTTTTAGATCTTGTGTCCCATGGCTTCCAACCAAGCCAAGATCTGAAAAATGCCGTAGATGCTCATATTTCAGAGTCTGATCCACCCGATTCAGATTTTGCGAAAACAGTCTGTTCTGTTTTAGAACGAGTGGATCCCATGAGAGTAAATTATTGGAACTGGCGTAAGAGCACGGTTTAG

Network for GWHGAAZE020452

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01239.23	PPTA	65	93	4.00E-05
PF01239.23	PPTA	99	128	5.50E-10
PF01239.23	PPTA	137	164	1.90E-10
PF01239.23	PPTA	168	198	2.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05955	FNTA	Biosynthesis of secondary metabolites	map01110
K05955	FNTA	Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0018342	biological_process	protein prenylation
GO:0008318	molecular_function	protein prenyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.838
	SRR3591706	second leaf	18.246
	SRR3591707	mature leaf	15.995
	SRR3591708	Shoot apex	29.818
	SRR3591709	Stem	20.268
	SRR3591710	White floral bud	31.245
	SRR3591711	White flower	33.841
	SRR3591712	Green floral bud	27.302
	SRR3591713	Yellow flower	19.992
SRP173429	SRR8316895	Juvenile bud stage	22.232
	SRR8316896	Juvenile bud stage	26.079
	SRR8316897	Juvenile bud stage	10.261
	SRR8316894	Third green stage	10.397
	SRR8316900	Third green stage	28.846
	SRR8316901	Third green stage	26.176
	SRR8316898	Complete white stage	14.103
	SRR8316899	Complete white stage	41.480
	SRR8316903	Complete white stage	18.444
	SRR8316902	Silver flowering stage	12.048
	SRR8316904	Silver flowering stage	13.558
	SRR8316905	Silver flowering stage	6.617
	SRR8316906	Gold flowering stage	20.183
	SRR8316907	Gold flowering stage	21.645
	SRR8316908	Gold flowering stage	16.852
SRP132670	SRR6706286	Control	19.685
	SRR6706287	Light intensity 50%	20.382
	SRR6706288	Light intensity 20%	21.079
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.713
	CNS0095593	Slightly white alabastrum(diploid) 2	24.155
	CNS0095594	Slightly white alabastrum(diploid) 3	18.222
	CNS0095595	Whole white alabastrum(diploid) 2	17.622
	CNS0095596	Whole white alabastrum(diploid) 3	14.457
	CNS0095597	Whole white alabastrum(diploid) 4	27.557
	CNS0095598	Silvery flower (diploied) 1	22.638
	CNS0095599	Silvery flower (diploied) 2	19.675
	CNS0095600	Silvery flower (diploied) 3	26.734
	CNS0095601	Golden flower (diploid) 1	17.314
	CNS0095602	Golden flower (diploid) 2	27.160
	CNS0095603	Golden flower (diploid) 3	24.688
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.856
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.203
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.785
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.682
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.055
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.571
	CNS0095610	Silvery flower (tetraploid) 1	20.046
	CNS0095611	Silvery flower (tetraploid) 2	20.104
	CNS0095612	Silvery flower (tetraploid) 3	12.535
	CNS0095613	Golden flower (tetraploid) 1	9.920
	CNS0095614	Golden flower (tetraploid) 2	17.117
	CNS0095615	Golden flower (tetraploid) 3	14.301
CRA001975	CRR073297	Stem 1	23.596
	CRR073298	Stem 2	24.870
	CRR073299	Stem 3	29.356
	CRR073300	Leaf 1	21.463
	CRR073301	Leaf 2	19.529
	CRR073302	Leaf 3	24.939
	CRR073303	Juvenile bud 1	24.111
	CRR073304	Juvenile bud 2	18.011
	CRR073305	Juvenile bud 3	16.993
	CRR073306	Third green 1	5.505
	CRR073307	Third green 2	5.748
	CRR073308	Third green 3	5.718
	CRR073309	Second white 1	9.770
	CRR073310	Second white 2	10.155
	CRR073311	Second white 3	9.200
	CRR073312	Silver flowering 1	6.180
	CRR073313	Silver flowering 2	7.612
	CRR073314	Silver flowering 3	6.082
	CRR073315	Gold flowering 1	22.440
	CRR073316	Gold flowering 2	23.097
	CRR073317	Gold flowering 3	18.000
	CRR073318	Tawny withering 1	27.797
	CRR073319	Tawny withering 2	20.759
	CRR073320	Tawny withering 3	25.141