Detail information of GWHGAAZE020436


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007033961.10Kinase family protein isoform 2 [Theobroma cacao]
COGNP_907608.10.0000003histidyl-tRNA synthetase
Swissprottr|Q9LX30|GCN2_ARATH0Probable serine/threonine-protein kinase GCN2
trEMBLtr|A0A061EKG5|A0A061EKG5_THECC0Kinase family protein isoform 2 {ECO:0000313|EMBL:EOY04887.1}
TAIR10AT3G59410.20protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene53350035342905-
GWHAAZE00000006mRNA53350035342905-
GWHAAZE00000006exon53350035335113-
GWHAAZE00000006exon53361775336299-
GWHAAZE00000006exon53363895336491-
GWHAAZE00000006exon53365995336684-
GWHAAZE00000006exon53370785337185-
GWHAAZE00000006exon53395345339670-
GWHAAZE00000006exon53397425339850-
GWHAAZE00000006exon53402205340303-
GWHAAZE00000006exon53404105340541-
GWHAAZE00000006exon53410275341083-
GWHAAZE00000006exon53412065341286-
GWHAAZE00000006exon53421105342203-
GWHAAZE00000006exon53426375342905-
GWHAAZE00000006CDS53426375342905-
GWHAAZE00000006CDS53421105342203-
GWHAAZE00000006CDS53412065341286-
GWHAAZE00000006CDS53410275341083-
GWHAAZE00000006CDS53404105340541-
GWHAAZE00000006CDS53402205340303-
GWHAAZE00000006CDS53397425339850-
GWHAAZE00000006CDS53395345339670-
GWHAAZE00000006CDS53370785337185-
GWHAAZE00000006CDS53365995336684-
GWHAAZE00000006CDS53363895336491-
GWHAAZE00000006CDS53361775336299-
GWHAAZE00000006CDS53350035335113-
Transcript Sequence

Network for GWHGAAZE020436

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13393.7tRNA-synt_His1313742.80E-13
PF12745.8HGTP_anticodon23924885.00E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K16196EIF2AK4 Protein processing in endoplasmic reticulum map04141
Autophagy - animalmap04140
Autophagy - yeastmap04138

Gene Ontology

GO term OntologyName
GO:0005737cellular_componentcytoplasm

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.691
SRR3591706second leaf5.127
SRR3591707mature leaf4.814
SRR3591708Shoot apex5.080
SRR3591709Stem7.458
SRR3591710White floral bud12.581
SRR3591711White flower10.053
SRR3591712Green floral bud8.348
SRR3591713Yellow flower6.925
SRP173429 SRR8316895Juvenile bud stage 5.511
SRR8316896Juvenile bud stage 7.261
SRR8316897Juvenile bud stage 3.207
SRR8316894Third green stage 2.309
SRR8316900Third green stage 7.723
SRR8316901Third green stage 7.319
SRR8316898Complete white stage 3.381
SRR8316899Complete white stage 8.622
SRR8316903Complete white stage 6.125
SRR8316902Silver flowering stage2.883
SRR8316904Silver flowering stage5.164
SRR8316905Silver flowering stage2.388
SRR8316906Gold flowering stage 5.300
SRR8316907Gold flowering stage 5.858
SRR8316908Gold flowering stage 5.908
SRP132670SRR6706286Control4.415
SRR6706287Light intensity 50%5.761
SRR6706288Light intensity 20%6.456
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.305
CNS0095593Slightly white alabastrum(diploid) 26.162
CNS0095594Slightly white alabastrum(diploid) 35.043
CNS0095595Whole white alabastrum(diploid) 25.503
CNS0095596Whole white alabastrum(diploid) 33.194
CNS0095597Whole white alabastrum(diploid) 44.131
CNS0095598Silvery flower (diploied) 18.361
CNS0095599Silvery flower (diploied) 24.712
CNS0095600Silvery flower (diploied) 35.952
CNS0095601Golden flower (diploid) 15.054
CNS0095602Golden flower (diploid) 25.975
CNS0095603Golden flower (diploid) 35.756
CNS0095604Slightly white alabastrum(tetraploid) 17.353
CNS0095605Slightly white alabastrum(tetraploid) 26.371
CNS0095606Slightly white alabastrum(tetraploid) 312.780
CNS0095607Whole white alabastrum(tetraploid) 16.416
CNS0095608Whole white alabastrum(tetraploid) 24.769
CNS0095609Whole white alabastrum(tetraploid) 37.720
CNS0095610Silvery flower (tetraploid) 18.067
CNS0095611Silvery flower (tetraploid) 28.181
CNS0095612Silvery flower (tetraploid) 311.580
CNS0095613Golden flower (tetraploid) 14.832
CNS0095614Golden flower (tetraploid) 26.245
CNS0095615Golden flower (tetraploid) 33.373
CRA001975CRR073297Stem 18.235
CRR073298Stem 25.298
CRR073299Stem 33.642
CRR073300Leaf 18.517
CRR073301Leaf 28.467
CRR073302Leaf 34.303
CRR073303Juvenile bud 16.695
CRR073304Juvenile bud 23.098
CRR073305Juvenile bud 38.040
CRR073306Third green 11.391
CRR073307Third green 21.865
CRR073308Third green 32.566
CRR073309Second white 11.057
CRR073310Second white 21.139
CRR073311Second white 31.834
CRR073312Silver flowering 10.192
CRR073313Silver flowering 20.925
CRR073314Silver flowering 30.445
CRR073315Gold flowering 12.004
CRR073316Gold flowering 23.872
CRR073317Gold flowering 30.630
CRR073318Tawny withering 14.144
CRR073319Tawny withering 27.181
CRR073320Tawny withering 34.938