Gene detail

Detail information of GWHGAAZE020405

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004504942.1	0	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Cicer arietinum]
COG	YP_001958461.1	1E-24	hypothetical protein Aasi_1443
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	2E-178	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|U5GRR1\|U5GRR1_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP66260.1}
TAIR10	AT5G10530.1	7E-106	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	3717550	3719794	+
GWHAAZE00000006	mRNA	3717550	3719794	+
GWHAAZE00000006	exon	3717550	3718497	+
GWHAAZE00000006	exon	3718715	3719794	+
GWHAAZE00000006	CDS	3717550	3718497	+
GWHAAZE00000006	CDS	3718715	3719794	+

Transcript Sequence
>GWHTAAZE020427 ATGCCTTCCTTCAAATCTCTCTACACACTCATAATCCTCACAATCTCATGCTTTCAAACAATCCCTTCTTCATCACAACAATTATCCTTCAACTTCACCGATTTCGATCCAAACAACCGTGAGCTCAACTACTCCGGGGACTCCACTGCTTGGGACCATGTAATCCAACTCACCATCAACCTAAAGAACAAGAACATGAATAGTAGCATTGGTCGAGTCACCTACTTCAAGCCAATGCAACTTTGGGACAAATCATCGAAAGCCCAAGCCGACTTCACCACTCATTTCTCCTTCATCATTGATGCCGACACTGTGAACTTTTTTGGTGATGGGATGGCCTTCTTCCTCGCCCCGGTTAACTTTCCCCTCCCTCGGCGTGGAGAAGGGGCAGGACTTGGCCTTGTTTGTGGAGAACAAATCATTAACTCAACGTTTAACTCGACGTTGAACCCCTTTGTAGCTGTCGAATTTGATACATTCGTGAATAAGAACTGGGACCCCGACCTGGGTTATGGTCATGTGGGTATCGATGTGAATTCTATGATATCTGTCAAGAATGTAACTTGGTGGGATCAAATTCCCATCCCCTCGCCAATCTACGAGGCTTGGGTGACTTACAATTCTACTACAAAGAATCTAAGCGTCGTGTTTACGAGTTATATTAATGACTATGTTTCTCTCGAAAGCCTTTATGAAATAATCGATCTTAGCAAGTACTTGCCCGAATGGGTTAGTTTTGGTTTTTCGGCAGCAACGGGGGACTGTTTCGAGATCCACAATCTCCATTCTTGGGAGTTTAGTTCAAATATAAAGATAGTTGATGTAATTAGTCCGATAAGCTCGATTAGTCCGATTATTTCAATTAGTCCGATTATTTCAATTAGTCCAAGCCCGTTAGAACAAGTGGTGAATAATACTACTGTGAAAAAGAGAGGGAACAATAGAAAGAGGAAGGGAAAGTTGGAGAAGGGGGGATTTGGTGGGGTTTACAAAGGGTTCTTGAGAGAATTGAATTCCTATGTTGCTGTCAAGAGGGTATCAAGGGGTTCCAAACAAGGGATAAAGGAGTACGCGTCCGAAGTGAGGACTATTAGCCGGTTGAGGCACCGGAATTTGGTGCAACTCATCGGTTGGTGCCACGAGGAAAGAGAACTACTACTCGTCTACGAGTATATGCCTAATGGTAGCCTCGACTATCATCTTTTCAAAGAAAGCGGTTTCTTAACATGGGCGATGAGGTATAGTATCGCCAAAGGACTTGCGTCAGCACTACTCTACCTACACGAAGAATGGGAACAATGTGTGCTCCACCGGGACATAAAATCAAGCAACATCATGTTGGACTTGAGTTTCAATGCAAAACTTGGGGATTTCGGCCTAGCTAGGCTAGTCGACCACGACAAAGGTGCACAAACTACCCTTTTAGCTGGGACCATGGGCTACATGGCCCCTGAATATGTGATAACTGGTCAGGCTAGCAAGGGTTCCGATGTCTATAGCTTTGGCATTGTGGCTCTTGAAATAGCAAGTGGGCTAAAACCCATGGACCAAAAGGGCGTAGAGGGTCAAGTAAGGCTCGTGGACCACATTTGGGACCTCTACGGACTAGGTAAGCTACTTGAGGGAGCTGACCCGAAACTTTGTGGAGATTTTGATGACTCACAAATGGAGTGTTTGATGATTGTGGGGCTTTGGTGCGCTCACCCGGACCACAGTCTCCGGCCTAGTATAAGGCAAGCTGTTCAAGTGCTTAGCCTCGAGGCTCCATTGCCTAATCTTCCATCGGCAATGCCAGTGCCAACTTATATGTATAAGCCCATGGATATGAATGCATTTTTGCTGTCTTCATCTTATAAATACACTGAAAAAGGGCAGACGGTTTTGTCGTCGAGTTCTAGTTACTCCTCTAAGGTCATCACAACGTCTTCTGCAGGTAACTCCTCTAAGGTCATCACAACATCTTCTGCAGGTAACTCCTCTAAGGTCACCACAACGTCTTATGCGGGTTCCTCGTCTTCATTGCTTTAG

Network for GWHGAAZE020405

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	28	271	1.00E-66
PF00069.26	Pkinase	318	582	3.20E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.854
	SRR3591706	second leaf	5.050
	SRR3591707	mature leaf	3.837
	SRR3591708	Shoot apex	1.995
	SRR3591709	Stem	1.548
	SRR3591710	White floral bud	0.536
	SRR3591711	White flower	0.273
	SRR3591712	Green floral bud	0.842
	SRR3591713	Yellow flower	0.079
SRP173429	SRR8316895	Juvenile bud stage	0.466
	SRR8316896	Juvenile bud stage	0.475
	SRR8316897	Juvenile bud stage	0.213
	SRR8316894	Third green stage	0.352
	SRR8316900	Third green stage	1.003
	SRR8316901	Third green stage	0.913
	SRR8316898	Complete white stage	0.128
	SRR8316899	Complete white stage	1.622
	SRR8316903	Complete white stage	0.362
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.034
	SRR8316906	Gold flowering stage	0.020
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.067
SRP132670	SRR6706286	Control	2.120
	SRR6706287	Light intensity 50%	2.241
	SRR6706288	Light intensity 20%	2.307
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.236
	CNS0095593	Slightly white alabastrum(diploid) 2	0.075
	CNS0095594	Slightly white alabastrum(diploid) 3	0.200
	CNS0095595	Whole white alabastrum(diploid) 2	0.168
	CNS0095596	Whole white alabastrum(diploid) 3	0.193
	CNS0095597	Whole white alabastrum(diploid) 4	0.338
	CNS0095598	Silvery flower (diploied) 1	0.053
	CNS0095599	Silvery flower (diploied) 2	0.148
	CNS0095600	Silvery flower (diploied) 3	0.035
	CNS0095601	Golden flower (diploid) 1	0.446
	CNS0095602	Golden flower (diploid) 2	0.074
	CNS0095603	Golden flower (diploid) 3	0.056
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.731
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.239
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.927
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.205
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.453
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.986
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.017
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.016
CRA001975	CRR073297	Stem 1	0.669
	CRR073298	Stem 2	0.955
	CRR073299	Stem 3	0.505
	CRR073300	Leaf 1	2.166
	CRR073301	Leaf 2	1.620
	CRR073302	Leaf 3	0.744
	CRR073303	Juvenile bud 1	1.473
	CRR073304	Juvenile bud 2	0.834
	CRR073305	Juvenile bud 3	1.192
	CRR073306	Third green 1	0.236
	CRR073307	Third green 2	0.385
	CRR073308	Third green 3	0.245
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.031
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	7.918
	CRR073316	Gold flowering 2	5.986
	CRR073317	Gold flowering 3	11.414
	CRR073318	Tawny withering 1	0.869
	CRR073319	Tawny withering 2	1.408
	CRR073320	Tawny withering 3	0.353