Gene detail

Detail information of GWHGAAZE020387

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006369692.1	0	Chain H family protein [Populus trichocarpa]
COG	YP_001958461.1	2E-25	hypothetical protein Aasi_1443
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	0	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|B9NHD6\|B9NHD6_POPTR	0	Chain H family protein {ECO:0000313\|EMBL:ERP66261.1}
TAIR10	AT5G10530.1	5E-106	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	2977360	2979589	+
GWHAAZE00000006	mRNA	2977360	2979589	+
GWHAAZE00000006	exon	2977360	2979369	+
GWHAAZE00000006	exon	2979437	2979589	+
GWHAAZE00000006	CDS	2977360	2979369	+
GWHAAZE00000006	CDS	2979437	2979589	+

Transcript Sequence
>GWHTAAZE020409 ATGCCTTCCTTCAAATCTCTCTACACACTCATAATCCTCACAATCTCATGCTTTCAAACAATCCCTTCTTCATCACAACAATTATCCTTCAAGTTCACCGATTTCGATCCAAACAACCGTGAGCTCAACTACTCCGGGGACTCCACTGCTTGGGACCATGTAATCCAACTCACCATCAACCTAAAGAACAAGAACATGAATAGTAGCATTGGTCGAGTCACCTACTTCAAGCCAATGCAACTTTGGGACAAATCATCGAAAGCCCAAGCCGACTTCACCACTCATTTCTCCTTCACCATTGATGCCGACACTGTGAACTTTTTTGGTGATGGGATGGCCTTCTTCCTCGCCCTGGTTAACTTTCCCCTCCCTCGGCGCGGAGAAGGGGCAGGACTTGGCCTTGTTTGTGGAGAACAAATCATTAACTCAACGTTTAACTCGACGTTGAACCCCTTTGTAGCTGTCGAATTTGATACATTCGTGAATAAGAACTGGGACCCCGACCTGGGTTATGGTCATGTGGGTATCGATGTGAATTCTATGATATCTGTCAAGAATGTAACTTGGTGGGATCAAATTCCCATCCCCTCGCCAATCTACGAGGCTTGGGTGACTTACAATTCTACTACAAAGAATCTAAGCGTCGTGTTTACGAGTTATATTAATGACTATGTTTCTCTCAAAAGCCTTTATGAAATAATCGATCTTAGCAAGTACTTGCCCGAATGGGTTAGTTTTGGTTTTTCGGCAGCAACGGGGGACTGTTTCGAGATCCACAATCTCCATTCTTGGGAGTTTAGTTCAAATATAAAGATAGTTGATGTAATTAGTCCGATAAGCTCGATTAGTCCGATTATTTCAATTAGTCCAAGCCCGTTAGAACAAGTGGTGAATAATACTACTGTGAAAAAGAGAGGGAACAATAGAAAGGTAGTGGTGGGATTTTCTGTGGGTGGGTCAACTTTTGGGTTGATTTTGATTAGTTTGTTGGGTTTTATATTGTTTGGTTACAGGAGGAACGAAATGAAATCAGTGGAAAAGAAAGAAGAGGCCGCATTCTTTGAATTTTCCTCTGAATTTGAAAATGAAACAGGACCCAAGAAATTTTCATACAAGGAATTGGCTGTTGCAACAAACGACTTTGTAGAGGAAGGGAAAGTTGGAGAAGGGGGATTTGGTGGGGTTTACAAAGGGTTCTTGAGAGAATTGAATTCCTATGTTGCTGTCAAGAGGGTATCAAGGGGTTCCAAACAAGGGATAAAGGAGTACGCGTCCGAAGTGAGGACTATTAGCCGGTTGAGGCACCGGAATTTGGTGCAACTCATCGGTTGGTGCCACGAGGAAAGAGAACTACTACTCGTCTACGAGTATATGCCTAATGGTAGCCTTGACTATCATCTTTTCAAAGAAAGCGGTTTCTTAACATGGGCGATGAGGTATAGTATCGCCAAAGGACTTGCGTCAGCACTACTCTACCTACACGAAGAATGGGAACAATGTGTGCTCCACCGGGACATAAAATCAAGCAACATCATGTTGGACTTGAGTTTCAATGCAAAACTTGGGGATTTCGGCCTAGCTAGGCTAGTCGACCACGACAAAGGTGCACAAACTACCCTTTTAGCTGGGACCATGGGCTACATGGCCCCTGAATGTGTGATAACTGGTCAGGCTAGCAAGGGTTCCGATGTCTATAGCTTTGGCATTGTGGCTCTTGAAATAGCAAGTGGGCTAAAACCCATGGACCAAAAGGGCGTAGAGGGTCAAGTAAGGCTCGTGGACCACATTTGGGACCTCTACGGACTAGGTAAGCTACTTGAGGGAGCTGACCCGAAACTTTGTGGAGATTTTGATGACTCACAAATGGAGTGTTTGATGATTGTGGGGCTTTGGTGTGCTCACCCGGACCACAGTCTCCGGCCTAGTATAAGGCAAGCTGTTCAAGTGCTTAGCCTCGAGGCTCCATTGCCTAATCTTCCATCGGCAATGCCAGTGCCAACTTATATATATACGGTTTTGTCGTCGAGTTCTAGTTACTCCTCTAAGGTCATCACAACGTCTTCTGCAGGTAACTCCTCTAAGGTCATCACAACATCTTCTGCAGGTAACTCCTCTAAGGTCACCACAACGTCTTATGCGGGTTCCTCGTCTTCATTGCTTTAG

Network for GWHGAAZE020387

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00139.20	Lectin_legB	28	271	1.70E-65
PF00069.26	Pkinase	382	648	2.50E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.540
	SRR3591706	second leaf	5.960
	SRR3591707	mature leaf	4.691
	SRR3591708	Shoot apex	2.291
	SRR3591709	Stem	1.549
	SRR3591710	White floral bud	0.729
	SRR3591711	White flower	0.281
	SRR3591712	Green floral bud	1.107
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.246
	SRR8316896	Juvenile bud stage	0.100
	SRR8316897	Juvenile bud stage	0.035
	SRR8316894	Third green stage	0.249
	SRR8316900	Third green stage	0.843
	SRR8316901	Third green stage	0.915
	SRR8316898	Complete white stage	0.020
	SRR8316899	Complete white stage	0.964
	SRR8316903	Complete white stage	0.283
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.019
	SRR8316907	Gold flowering stage	0.065
	SRR8316908	Gold flowering stage	0.016
SRP132670	SRR6706286	Control	1.268
	SRR6706287	Light intensity 50%	1.449
	SRR6706288	Light intensity 20%	1.478
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.232
	CNS0095593	Slightly white alabastrum(diploid) 2	0.035
	CNS0095594	Slightly white alabastrum(diploid) 3	0.251
	CNS0095595	Whole white alabastrum(diploid) 2	0.161
	CNS0095596	Whole white alabastrum(diploid) 3	0.098
	CNS0095597	Whole white alabastrum(diploid) 4	0.186
	CNS0095598	Silvery flower (diploied) 1	0.296
	CNS0095599	Silvery flower (diploied) 2	0.120
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.075
	CNS0095602	Golden flower (diploid) 2	0.072
	CNS0095603	Golden flower (diploid) 3	0.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.207
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.054
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.685
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.107
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.073
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.709
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.025
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.587
	CRR073298	Stem 2	0.908
	CRR073299	Stem 3	0.550
	CRR073300	Leaf 1	1.103
	CRR073301	Leaf 2	1.418
	CRR073302	Leaf 3	1.237
	CRR073303	Juvenile bud 1	0.705
	CRR073304	Juvenile bud 2	0.213
	CRR073305	Juvenile bud 3	0.634
	CRR073306	Third green 1	0.123
	CRR073307	Third green 2	0.071
	CRR073308	Third green 3	0.087
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.023
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.001
	CRR073315	Gold flowering 1	5.410
	CRR073316	Gold flowering 2	5.553
	CRR073317	Gold flowering 3	6.951
	CRR073318	Tawny withering 1	1.184
	CRR073319	Tawny withering 2	0.728
	CRR073320	Tawny withering 3	0.033