Detail information of GWHGAAZE020361


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIR10AT5G25060.10.001RNA recognition motif (RRM)-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene19428831946498+
GWHAAZE00000006mRNA19428831946498+
GWHAAZE00000006exon19428831942885+
GWHAAZE00000006exon19431201943187+
GWHAAZE00000006exon19432691943374+
GWHAAZE00000006exon19463701946498+
GWHAAZE00000006CDS19428831942885+
GWHAAZE00000006CDS19431201943187+
GWHAAZE00000006CDS19432691943374+
GWHAAZE00000006CDS19463701946498+
Transcript Sequence

Network for GWHGAAZE020361

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_110594.40E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12842SR140 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.340
SRR3591707mature leaf0.136
SRR3591708Shoot apex0.115
SRR3591709Stem0.135
SRR3591710White floral bud0.000
SRR3591711White flower0.024
SRR3591712Green floral bud1.499
SRR3591713Yellow flower0.077
SRP173429 SRR8316895Juvenile bud stage 3.646
SRR8316896Juvenile bud stage 6.630
SRR8316897Juvenile bud stage 3.382
SRR8316894Third green stage 1.220
SRR8316900Third green stage 3.783
SRR8316901Third green stage 3.858
SRR8316898Complete white stage 0.060
SRR8316899Complete white stage 0.110
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.056
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control2.248
SRR6706287Light intensity 50%1.360
SRR6706288Light intensity 20%0.734
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.689
CNS0095593Slightly white alabastrum(diploid) 22.978
CNS0095594Slightly white alabastrum(diploid) 36.086
CNS0095595Whole white alabastrum(diploid) 22.934
CNS0095596Whole white alabastrum(diploid) 33.451
CNS0095597Whole white alabastrum(diploid) 41.123
CNS0095598Silvery flower (diploied) 10.029
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 15.568
CNS0095605Slightly white alabastrum(tetraploid) 25.596
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 13.599
CNS0095608Whole white alabastrum(tetraploid) 24.612
CNS0095609Whole white alabastrum(tetraploid) 34.334
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.147
CNS0095612Silvery flower (tetraploid) 30.023
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.033
CRA001975CRR073297Stem 13.417
CRR073298Stem 22.701
CRR073299Stem 33.825
CRR073300Leaf 10.714
CRR073301Leaf 20.418
CRR073302Leaf 30.108
CRR073303Juvenile bud 10.665
CRR073304Juvenile bud 20.439
CRR073305Juvenile bud 30.000
CRR073306Third green 10.268
CRR073307Third green 20.000
CRR073308Third green 30.242
CRR073309Second white 10.000
CRR073310Second white 20.725
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.091
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.150