Detail information of GWHGAAZE020356


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIR10AT1G22760.10.002poly(A) binding protein 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000006gene15537081557313-
GWHAAZE00000006mRNA15537081557313-
GWHAAZE00000006exon15573111557313-
GWHAAZE00000006exon15570101557077-
GWHAAZE00000006exon15568231556928-
GWHAAZE00000006exon15561071556162-
GWHAAZE00000006exon15541861554337-
GWHAAZE00000006exon15537081553805-
GWHAAZE00000006CDS15573111557313-
GWHAAZE00000006CDS15570101557077-
GWHAAZE00000006CDS15568231556928-
GWHAAZE00000006CDS15561071556162-
GWHAAZE00000006CDS15541861554337-
GWHAAZE00000006CDS15537081553805-
Transcript Sequence

Network for GWHGAAZE020356

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_110592.10E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12842SR140 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.722
SRR3591706second leaf0.579
SRR3591707mature leaf0.086
SRR3591708Shoot apex0.718
SRR3591709Stem0.980
SRR3591710White floral bud0.498
SRR3591711White flower1.539
SRR3591712Green floral bud2.567
SRR3591713Yellow flower0.360
SRP173429 SRR8316895Juvenile bud stage 9.342
SRR8316896Juvenile bud stage 15.060
SRR8316897Juvenile bud stage 3.178
SRR8316894Third green stage 3.115
SRR8316900Third green stage 4.910
SRR8316901Third green stage 7.248
SRR8316898Complete white stage 0.143
SRR8316899Complete white stage 0.070
SRR8316903Complete white stage 0.131
SRR8316902Silver flowering stage0.076
SRR8316904Silver flowering stage0.036
SRR8316905Silver flowering stage0.080
SRR8316906Gold flowering stage 0.064
SRR8316907Gold flowering stage 0.002
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control2.324
SRR6706287Light intensity 50%2.210
SRR6706288Light intensity 20%1.899
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.226
CNS0095593Slightly white alabastrum(diploid) 26.822
CNS0095594Slightly white alabastrum(diploid) 317.694
CNS0095595Whole white alabastrum(diploid) 26.026
CNS0095596Whole white alabastrum(diploid) 38.662
CNS0095597Whole white alabastrum(diploid) 44.652
CNS0095598Silvery flower (diploied) 10.018
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.085
CNS0095601Golden flower (diploid) 10.704
CNS0095602Golden flower (diploid) 20.232
CNS0095603Golden flower (diploid) 30.189
CNS0095604Slightly white alabastrum(tetraploid) 17.166
CNS0095605Slightly white alabastrum(tetraploid) 28.899
CNS0095606Slightly white alabastrum(tetraploid) 30.491
CNS0095607Whole white alabastrum(tetraploid) 15.493
CNS0095608Whole white alabastrum(tetraploid) 27.524
CNS0095609Whole white alabastrum(tetraploid) 35.742
CNS0095610Silvery flower (tetraploid) 10.202
CNS0095611Silvery flower (tetraploid) 20.273
CNS0095612Silvery flower (tetraploid) 30.104
CNS0095613Golden flower (tetraploid) 10.165
CNS0095614Golden flower (tetraploid) 20.395
CNS0095615Golden flower (tetraploid) 30.288
CRA001975CRR073297Stem 15.051
CRR073298Stem 24.164
CRR073299Stem 39.546
CRR073300Leaf 10.795
CRR073301Leaf 21.369
CRR073302Leaf 32.205
CRR073303Juvenile bud 10.660
CRR073304Juvenile bud 20.423
CRR073305Juvenile bud 30.000
CRR073306Third green 10.245
CRR073307Third green 20.000
CRR073308Third green 30.096
CRR073309Second white 10.000
CRR073310Second white 20.047
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.133
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.087
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.504
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000