Gene detail

Detail information of GWHGAAZE020344

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010066951.1	6.9214E-145	PREDICTED: mitochondrial outer membrane protein porin of 36 kDa [Eucalyptus grandis]
Swissprot	tr\|P42056\|VDAC2_SOLTU	2E-145	Mitochondrial outer membrane protein porin of 36 kDa
trEMBL	tr\|A0A059BGL5\|A0A059BGL5_EUCGR	3E-145	Uncharacterized protein {ECO:0000313\|EMBL:KCW65006.1}
TAIR10	AT3G01280.1	4E-93	voltage dependent anion channel 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000006	gene	833260	834750	+
GWHAAZE00000006	mRNA	833260	834750	+
GWHAAZE00000006	exon	833260	833370	+
GWHAAZE00000006	exon	833643	833729	+
GWHAAZE00000006	exon	833870	834078	+
GWHAAZE00000006	exon	834444	834750	+
GWHAAZE00000006	CDS	833260	833370	+
GWHAAZE00000006	CDS	833643	833729	+
GWHAAZE00000006	CDS	833870	834078	+
GWHAAZE00000006	CDS	834444	834750	+

Transcript Sequence
>GWHTAAZE020366 GCCATTACTTCATCTGGAACTAAGAAAGGTGAATTTATTTTGGCGGATGTGAACACCCAACTGAAGAACAAAAACATCACAACTGATGTGAAAGTGGACACAAATTCCAATGTTTCTACGACCATTACCGTGGATGAACCTGCTCCAGGAATCAAGACAATTTTCAGCTTTATTGCTCCTGATCAGAGATCAGGCAAGGTGGAACTTCAATACTTGCACGAGTATGCCGGAATTAGTACCAGCATTGGACTGACTGCAAGTCCCATTGTCAACTTCTCAGGTATGGCTGGTAACAACATGGTCGCAATTGGGACTGATCTCTCATTTGACACTGCTACTGGTAACTTTACGAAATGCAATGCTGGAATTAGTCTCTCCACCGCTGATCTCATTGCCTCTATGACGTTGAACGACAAAGGCGACAAACTTACTGCATCCTACTACCACACAGTAAGCCCATTGACCAGTACAGCCGTGGGAGCCGAGTTGAGCCATAGCATAGCGAGCAACGAAAATACACTGACCATTGGAACACAGCATTCACTGGACCCACTAACCACTGTGAAAGCCCGGGTCAACAACTTTGGTAAGGCAAGTGCCCTCATCCAGCATGCATGGCATCCAAAGTTGGTCTTCACAATATCAGGAGAAGTGGACACCAGGGCAATTGAAAAAATTGCCAAGGTTGGTCTCGCATTGGCTCTCAAGCCCTGA

Network for GWHGAAZE020344

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01459.23	Porin_3	2	226	1.00E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15040	VDAC2	Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Ferroptosis	map04216
		Necroptosis	map04217
		Cellular senescence	map04218
		NOD-like receptor signaling pathway	map04621
		Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0098656	biological_process	anion transmembrane transport
GO:0055085	biological_process	transmembrane transport
GO:0005741	cellular_component	mitochondrial outer membrane
GO:0008308	molecular_function	voltage-gated anion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.963
	SRR3591706	second leaf	6.452
	SRR3591707	mature leaf	3.400
	SRR3591708	Shoot apex	6.688
	SRR3591709	Stem	12.736
	SRR3591710	White floral bud	10.655
	SRR3591711	White flower	6.920
	SRR3591712	Green floral bud	27.323
	SRR3591713	Yellow flower	9.691
SRP173429	SRR8316895	Juvenile bud stage	14.301
	SRR8316896	Juvenile bud stage	24.264
	SRR8316897	Juvenile bud stage	3.316
	SRR8316894	Third green stage	9.670
	SRR8316900	Third green stage	36.375
	SRR8316901	Third green stage	35.644
	SRR8316898	Complete white stage	2.944
	SRR8316899	Complete white stage	12.549
	SRR8316903	Complete white stage	3.941
	SRR8316902	Silver flowering stage	1.426
	SRR8316904	Silver flowering stage	2.574
	SRR8316905	Silver flowering stage	1.194
	SRR8316906	Gold flowering stage	1.885
	SRR8316907	Gold flowering stage	3.376
	SRR8316908	Gold flowering stage	1.266
SRP132670	SRR6706286	Control	18.535
	SRR6706287	Light intensity 50%	17.020
	SRR6706288	Light intensity 20%	18.670
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.765
	CNS0095593	Slightly white alabastrum(diploid) 2	22.612
	CNS0095594	Slightly white alabastrum(diploid) 3	25.312
	CNS0095595	Whole white alabastrum(diploid) 2	25.293
	CNS0095596	Whole white alabastrum(diploid) 3	22.937
	CNS0095597	Whole white alabastrum(diploid) 4	22.635
	CNS0095598	Silvery flower (diploied) 1	7.741
	CNS0095599	Silvery flower (diploied) 2	4.470
	CNS0095600	Silvery flower (diploied) 3	4.886
	CNS0095601	Golden flower (diploid) 1	5.329
	CNS0095602	Golden flower (diploid) 2	3.354
	CNS0095603	Golden flower (diploid) 3	4.834
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.777
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.374
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.416
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.004
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.534
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.891
	CNS0095610	Silvery flower (tetraploid) 1	1.688
	CNS0095611	Silvery flower (tetraploid) 2	1.490
	CNS0095612	Silvery flower (tetraploid) 3	1.400
	CNS0095613	Golden flower (tetraploid) 1	0.925
	CNS0095614	Golden flower (tetraploid) 2	2.254
	CNS0095615	Golden flower (tetraploid) 3	0.875
CRA001975	CRR073297	Stem 1	26.598
	CRR073298	Stem 2	19.200
	CRR073299	Stem 3	17.591
	CRR073300	Leaf 1	23.820
	CRR073301	Leaf 2	26.825
	CRR073302	Leaf 3	24.309
	CRR073303	Juvenile bud 1	16.982
	CRR073304	Juvenile bud 2	12.195
	CRR073305	Juvenile bud 3	11.664
	CRR073306	Third green 1	2.523
	CRR073307	Third green 2	2.576
	CRR073308	Third green 3	1.858
	CRR073309	Second white 1	2.646
	CRR073310	Second white 2	2.874
	CRR073311	Second white 3	2.069
	CRR073312	Silver flowering 1	1.269
	CRR073313	Silver flowering 2	2.093
	CRR073314	Silver flowering 3	1.553
	CRR073315	Gold flowering 1	6.473
	CRR073316	Gold flowering 2	10.523
	CRR073317	Gold flowering 3	5.243
	CRR073318	Tawny withering 1	8.896
	CRR073319	Tawny withering 2	10.836
	CRR073320	Tawny withering 3	8.511