Detail information of GWHGAAZE020299


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007131647.16.11804E-07hypothetical protein PHAVU_011G030600g [Phaseolus vulgaris]
trEMBLtr|V7AHU9|V7AHU9_PHAVU0.0000002Uncharacterized protein {ECO:0000313|EMBL:ESW03641.1}
TAIR10AT1G45100.10.00006RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene8342519783426528+
GWHAAZE00000005mRNA8342519783426528+
GWHAAZE00000005exon8342519783425279+
GWHAAZE00000005exon8342537283425516+
GWHAAZE00000005exon8342617283426312+
GWHAAZE00000005exon8342642483426528+
GWHAAZE00000005CDS8342519783425279+
GWHAAZE00000005CDS8342537283425516+
GWHAAZE00000005CDS8342617283426312+
GWHAAZE00000005CDS8342642483426528+
Transcript Sequence

Network for GWHGAAZE020299

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_118881.50E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13126PABPC RNA transport map03013
mRNA surveillance pathwaymap03015
RNA degradationmap03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 8.473
SRR8316896Juvenile bud stage 12.188
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 5.213
SRR8316900Third green stage 16.228
SRR8316901Third green stage 17.370
SRR8316898Complete white stage 5.453
SRR8316899Complete white stage 14.929
SRR8316903Complete white stage 8.352
SRR8316902Silver flowering stage5.861
SRR8316904Silver flowering stage8.909
SRR8316905Silver flowering stage5.411
SRR8316906Gold flowering stage 12.148
SRR8316907Gold flowering stage 13.056
SRR8316908Gold flowering stage 3.910
SRP132670SRR6706286Control15.922
SRR6706287Light intensity 50%19.406
SRR6706288Light intensity 20%20.681
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.996
CNS0095593Slightly white alabastrum(diploid) 210.647
CNS0095594Slightly white alabastrum(diploid) 310.594
CNS0095595Whole white alabastrum(diploid) 216.893
CNS0095596Whole white alabastrum(diploid) 314.895
CNS0095597Whole white alabastrum(diploid) 419.716
CNS0095598Silvery flower (diploied) 19.104
CNS0095599Silvery flower (diploied) 25.095
CNS0095600Silvery flower (diploied) 312.912
CNS0095601Golden flower (diploid) 18.812
CNS0095602Golden flower (diploid) 211.930
CNS0095603Golden flower (diploid) 311.879
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.016
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 112.530
CRR073298Stem 212.782
CRR073299Stem 311.940
CRR073300Leaf 117.898
CRR073301Leaf 215.089
CRR073302Leaf 318.293
CRR073303Juvenile bud 111.181
CRR073304Juvenile bud 212.866
CRR073305Juvenile bud 311.340
CRR073306Third green 13.444
CRR073307Third green 25.540
CRR073308Third green 33.721
CRR073309Second white 110.090
CRR073310Second white 212.238
CRR073311Second white 37.702
CRR073312Silver flowering 112.354
CRR073313Silver flowering 27.483
CRR073314Silver flowering 310.370
CRR073315Gold flowering 17.706
CRR073316Gold flowering 214.430
CRR073317Gold flowering 38.851
CRR073318Tawny withering 115.302
CRR073319Tawny withering 28.980
CRR073320Tawny withering 37.502