Gene detail

Detail information of GWHGAAZE020240

Functional Annotation

Database	Orthologs	Annotation
Nr	KDO73371.1	hypothetical protein CISIN_1g011636mg [Citrus sinensis]
Swissprot	tr\|Q93Z08\|E136_ARATH	Glucan endo-1,3-beta-glucosidase 6 (Precursor)
trEMBL	tr\|A0A067GDD2\|A0A067GDD2_CITSI	Uncharacterized protein {ECO:0000313\|EMBL:KDO73371.1}
TAIR10	AT5G58090.1	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	81136932	81141275	+
GWHAAZE00000005	mRNA	81136932	81141275	+
GWHAAZE00000005	exon	81136932	81137272	+
GWHAAZE00000005	exon	81139841	81139873	+
GWHAAZE00000005	exon	81140174	81141275	+
GWHAAZE00000005	CDS	81136932	81137272	+
GWHAAZE00000005	CDS	81139841	81139873	+
GWHAAZE00000005	CDS	81140174	81141275	+

Transcript Sequence
>GWHTAAZE020262 ATGGGTTTTATTATATCAGTGGGATTGCATTTGGTAATAGTATTATTAGTTTCAGTGGTGAGTTCAGTGGGTGGGATTGGTGCTAACTGGGGGACACAAGCATCACACCCACTGCCGCCAGAGACAGTGGTGAGGTTGCTGAGGGAAAATGGGATTCGAAAGGTGAAGCTATTTGATGCAGATTATGGGGCACTCAAGGCCCTTAGTAAATCTGGGATTGAGGTTATGGTTGGGATTCCCAATGACTTGTTAGCAACTATGGCTTCAAGTATGAAAGCTGCTGAGAAATGGGTTTCCAAGAATGTCTCTGCTCATGTCTCTTCCAATAGTGTCAACATTAGCGTACCGGAAGAGCAGTTCCAAGCTCTATGCTGGTACATTGCGGTTGGCAATGAACCTTTCTTGGCAACATACAACGGAACCTTTCTAAGAACAACTTTCCCGGCTCTTAGAAACATCCAATCCGCCCTAATAAAAGCCAACCTTGGCAACCGAGTGAAGGTCACTGTCCCCCTCAATGCCGATGTATATGAGTCCTCCTCTTCCCTTCCCTCCGGCGGCGACTTCCGAGCCGACATCCACGACTATGTGTTCCAAATCGTCAAGTTCTTGAATGATAACGGGGCCCCTTTCACCGTCAACATTTACCCCTTCATTAGCCTGTACATTGACTCGAATTTCCCGGTCGAGTATGCCTTCTTTGATGGCAATGCATCTCCTATAAACGATGGTGGCACAAACTATGACAACATGTTCGACGCAAATCATGATACACTTGTTTGGGCTTTGCAGAGAAATGGATTTGGTAACATGCCCATTATAGTCGGTGAGATCGGGTGGCCGACCGACGGGGACCGGAATGCTAACCTCGAGTACGCCCAACGGTTCAACCAAGGGTTCATGCAACATAGTGCAAAAGGGACCCCAATGAGGCCTGGTCCCATCGACGCTTATCTTTTTAGCTTGATTGATGAGGATGCTAAGAGCATTGACCCGGGTAACTTCGAGCGCCATTGGGGAGTTTTTACTTTCGATGGTCAACCCAAGTACTTGCTCAACCTTGGGACCACAAACACGGGGTCTTTGGTGCCAGCTAGAAATGTGCAGTACTTGGAGAAAAAGTGGTGCGTGATGAAGCCATCGGCAGGGTTAGATGATCCACAGGTGGCACTTAGTGTGAGCTACGCTTGCTCGCTAGCTGACTGTACCAGCCTTGGCTATCAAACGACTTGCGGGGGATTGGATGAACGAGGGAACATTTCATTTGCGTTTAATAGTTACTACCAGCAGAATAATCAGCTCAACGAGGCCTGCAAGTTCCCCGACCTATCGATGATCACGAAAACTGATCCAACAGTTGGGAGTTGTAGGTTTAGGGTCATGATTGAACCGTATTACGGGGCTGCAGTACCGAAACTTGGGTGGAGTTGGACCGGATGGGGTTTCGTTCTTGTTTTGTTGACAATTATTTGGTGA

Network for GWHGAAZE020240

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.19	Glyco_hydro_17	26	353	2.60E-64
PF07983.14	X8	374	443	9.90E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19893	GN5_6	Metabolic pathways	map01100
K19893	GN5_6	Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.226
	SRR3591706	second leaf	6.307
	SRR3591707	mature leaf	3.435
	SRR3591708	Shoot apex	9.664
	SRR3591709	Stem	7.770
	SRR3591710	White floral bud	2.482
	SRR3591711	White flower	1.590
	SRR3591712	Green floral bud	5.624
	SRR3591713	Yellow flower	0.411
SRP173429	SRR8316895	Juvenile bud stage	2.519
	SRR8316896	Juvenile bud stage	2.828
	SRR8316897	Juvenile bud stage	0.350
	SRR8316894	Third green stage	1.588
	SRR8316900	Third green stage	3.752
	SRR8316901	Third green stage	3.972
	SRR8316898	Complete white stage	0.197
	SRR8316899	Complete white stage	3.931
	SRR8316903	Complete white stage	0.387
	SRR8316902	Silver flowering stage	0.089
	SRR8316904	Silver flowering stage	0.347
	SRR8316905	Silver flowering stage	0.140
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.330
	SRR8316908	Gold flowering stage	0.349
SRP132670	SRR6706286	Control	5.269
	SRR6706287	Light intensity 50%	4.342
	SRR6706288	Light intensity 20%	4.549
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.918
	CNS0095593	Slightly white alabastrum(diploid) 2	4.465
	CNS0095594	Slightly white alabastrum(diploid) 3	2.436
	CNS0095595	Whole white alabastrum(diploid) 2	2.577
	CNS0095596	Whole white alabastrum(diploid) 3	3.368
	CNS0095597	Whole white alabastrum(diploid) 4	2.070
	CNS0095598	Silvery flower (diploied) 1	3.205
	CNS0095599	Silvery flower (diploied) 2	1.307
	CNS0095600	Silvery flower (diploied) 3	0.738
	CNS0095601	Golden flower (diploid) 1	1.665
	CNS0095602	Golden flower (diploid) 2	1.040
	CNS0095603	Golden flower (diploid) 3	1.298
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.374
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.132
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.069
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.787
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.184
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.257
	CNS0095610	Silvery flower (tetraploid) 1	0.589
	CNS0095611	Silvery flower (tetraploid) 2	0.633
	CNS0095612	Silvery flower (tetraploid) 3	0.484
	CNS0095613	Golden flower (tetraploid) 1	0.303
	CNS0095614	Golden flower (tetraploid) 2	0.572
	CNS0095615	Golden flower (tetraploid) 3	0.302
CRA001975	CRR073297	Stem 1	10.957
	CRR073298	Stem 2	10.862
	CRR073299	Stem 3	11.897
	CRR073300	Leaf 1	9.033
	CRR073301	Leaf 2	8.335
	CRR073302	Leaf 3	6.906
	CRR073303	Juvenile bud 1	7.451
	CRR073304	Juvenile bud 2	2.694
	CRR073305	Juvenile bud 3	6.143
	CRR073306	Third green 1	0.178
	CRR073307	Third green 2	0.173
	CRR073308	Third green 3	0.407
	CRR073309	Second white 1	0.232
	CRR073310	Second white 2	0.126
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.085
	CRR073313	Silver flowering 2	0.104
	CRR073314	Silver flowering 3	0.006
	CRR073315	Gold flowering 1	5.568
	CRR073316	Gold flowering 2	7.478
	CRR073317	Gold flowering 3	6.957
	CRR073318	Tawny withering 1	7.403
	CRR073319	Tawny withering 2	4.313
	CRR073320	Tawny withering 3	6.758