Detail information of GWHGAAZE020180


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010244201.13.02234E-19PREDICTED: pre-mRNA-splicing factor SLU7-like [Nelumbo nucifera]
Swissprottr|Q6ZK48|SLU7_ORYSJ6E-19Pre-mRNA-splicing factor SLU7
trEMBLtr|I1KK11|I1KK11_SOYBN2E-19Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G16120.1}
TAIR10AT1G65660.15E-15Pre-mRNA splicing Prp18-interacting factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene7940387279404581+
GWHAAZE00000005mRNA7940387279404581+
GWHAAZE00000005exon7940387279403964+
GWHAAZE00000005exon7940450479404581+
GWHAAZE00000005CDS7940387279403964+
GWHAAZE00000005CDS7940450479404581+
Transcript Sequence

Network for GWHGAAZE020180

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12819SLU7 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf35.867
SRR3591706second leaf12.427
SRR3591707mature leaf25.124
SRR3591708Shoot apex37.114
SRR3591709Stem36.774
SRR3591710White floral bud70.645
SRR3591711White flower86.855
SRR3591712Green floral bud58.262
SRR3591713Yellow flower78.634
SRP173429 SRR8316895Juvenile bud stage 54.621
SRR8316896Juvenile bud stage 79.404
SRR8316897Juvenile bud stage 23.882
SRR8316894Third green stage 29.558
SRR8316900Third green stage 78.347
SRR8316901Third green stage 95.907
SRR8316898Complete white stage 30.783
SRR8316899Complete white stage 89.221
SRR8316903Complete white stage 57.695
SRR8316902Silver flowering stage41.907
SRR8316904Silver flowering stage48.356
SRR8316905Silver flowering stage25.669
SRR8316906Gold flowering stage 78.515
SRR8316907Gold flowering stage 84.889
SRR8316908Gold flowering stage 77.024
SRP132670SRR6706286Control76.825
SRR6706287Light intensity 50%80.934
SRR6706288Light intensity 20%75.935
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1105.288
CNS0095593Slightly white alabastrum(diploid) 2116.677
CNS0095594Slightly white alabastrum(diploid) 3111.904
CNS0095595Whole white alabastrum(diploid) 2109.481
CNS0095596Whole white alabastrum(diploid) 3103.723
CNS0095597Whole white alabastrum(diploid) 4105.481
CNS0095598Silvery flower (diploied) 1106.926
CNS0095599Silvery flower (diploied) 291.905
CNS0095600Silvery flower (diploied) 387.354
CNS0095601Golden flower (diploid) 1104.342
CNS0095602Golden flower (diploid) 296.039
CNS0095603Golden flower (diploid) 389.779
CNS0095604Slightly white alabastrum(tetraploid) 1109.529
CNS0095605Slightly white alabastrum(tetraploid) 2101.900
CNS0095606Slightly white alabastrum(tetraploid) 396.085
CNS0095607Whole white alabastrum(tetraploid) 1102.154
CNS0095608Whole white alabastrum(tetraploid) 297.140
CNS0095609Whole white alabastrum(tetraploid) 385.407
CNS0095610Silvery flower (tetraploid) 1108.241
CNS0095611Silvery flower (tetraploid) 2108.163
CNS0095612Silvery flower (tetraploid) 3109.412
CNS0095613Golden flower (tetraploid) 1113.585
CNS0095614Golden flower (tetraploid) 299.137
CNS0095615Golden flower (tetraploid) 3102.082
CRA001975CRR073297Stem 154.558
CRR073298Stem 249.527
CRR073299Stem 338.337
CRR073300Leaf 155.296
CRR073301Leaf 252.730
CRR073302Leaf 342.525
CRR073303Juvenile bud 143.586
CRR073304Juvenile bud 239.536
CRR073305Juvenile bud 346.693
CRR073306Third green 138.031
CRR073307Third green 229.071
CRR073308Third green 337.662
CRR073309Second white 18.905
CRR073310Second white 235.609
CRR073311Second white 328.754
CRR073312Silver flowering 125.392
CRR073313Silver flowering 217.000
CRR073314Silver flowering 328.794
CRR073315Gold flowering 129.024
CRR073316Gold flowering 230.165
CRR073317Gold flowering 315.315
CRR073318Tawny withering 143.325
CRR073319Tawny withering 248.026
CRR073320Tawny withering 345.976