Detail information of GWHGAAZE020177


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006351675.10PREDICTED: pre-mRNA-splicing factor SLU7-like [Solanum tuberosum]
Swissprottr|Q9SHY8|SLU7A_ARATH0Pre-mRNA-splicing factor SLU7-A
trEMBLtr|M1ANM6|M1ANM6_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400026716}
TAIR10AT1G65660.10Pre-mRNA splicing Prp18-interacting factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene7938487779395239+
GWHAAZE00000005mRNA7938487779395239+
GWHAAZE00000005exon7938487779384908+
GWHAAZE00000005exon7938609179386266+
GWHAAZE00000005exon7939295879393121+
GWHAAZE00000005exon7939321879393330+
GWHAAZE00000005exon7939368779394094+
GWHAAZE00000005exon7939427379394408+
GWHAAZE00000005exon7939451179394810+
GWHAAZE00000005exon7939501879395239+
GWHAAZE00000005five_prime_UTR7938487779384908+
GWHAAZE00000005five_prime_UTR7938609179386250+
GWHAAZE00000005CDS7938625179386266+
GWHAAZE00000005CDS7939295879393121+
GWHAAZE00000005CDS7939321879393330+
GWHAAZE00000005CDS7939368779394094+
GWHAAZE00000005CDS7939427379394408+
GWHAAZE00000005CDS7939451179394810+
GWHAAZE00000005CDS7939501879395239+
Transcript Sequence

Network for GWHGAAZE020177

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11708.9Slu71364032.50E-98
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12819SLU7 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.351
SRR3591706second leaf17.254
SRR3591707mature leaf23.042
SRR3591708Shoot apex27.947
SRR3591709Stem33.209
SRR3591710White floral bud73.947
SRR3591711White flower82.885
SRR3591712Green floral bud54.508
SRR3591713Yellow flower82.181
SRP173429 SRR8316895Juvenile bud stage 33.835
SRR8316896Juvenile bud stage 46.775
SRR8316897Juvenile bud stage 6.225
SRR8316894Third green stage 21.601
SRR8316900Third green stage 51.440
SRR8316901Third green stage 47.578
SRR8316898Complete white stage 22.619
SRR8316899Complete white stage 61.671
SRR8316903Complete white stage 45.242
SRR8316902Silver flowering stage27.320
SRR8316904Silver flowering stage42.767
SRR8316905Silver flowering stage19.392
SRR8316906Gold flowering stage 62.157
SRR8316907Gold flowering stage 57.090
SRR8316908Gold flowering stage 37.767
SRP132670SRR6706286Control95.775
SRR6706287Light intensity 50%92.816
SRR6706288Light intensity 20%92.215
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.657
CNS0095593Slightly white alabastrum(diploid) 231.920
CNS0095594Slightly white alabastrum(diploid) 333.320
CNS0095595Whole white alabastrum(diploid) 237.118
CNS0095596Whole white alabastrum(diploid) 329.789
CNS0095597Whole white alabastrum(diploid) 436.493
CNS0095598Silvery flower (diploied) 140.484
CNS0095599Silvery flower (diploied) 239.428
CNS0095600Silvery flower (diploied) 373.568
CNS0095601Golden flower (diploid) 140.481
CNS0095602Golden flower (diploid) 270.575
CNS0095603Golden flower (diploid) 369.432
CNS0095604Slightly white alabastrum(tetraploid) 146.764
CNS0095605Slightly white alabastrum(tetraploid) 241.639
CNS0095606Slightly white alabastrum(tetraploid) 370.194
CNS0095607Whole white alabastrum(tetraploid) 138.633
CNS0095608Whole white alabastrum(tetraploid) 233.730
CNS0095609Whole white alabastrum(tetraploid) 358.168
CNS0095610Silvery flower (tetraploid) 179.768
CNS0095611Silvery flower (tetraploid) 294.452
CNS0095612Silvery flower (tetraploid) 380.970
CNS0095613Golden flower (tetraploid) 149.363
CNS0095614Golden flower (tetraploid) 268.074
CNS0095615Golden flower (tetraploid) 397.606
CRA001975CRR073297Stem 174.696
CRR073298Stem 273.374
CRR073299Stem 369.980
CRR073300Leaf 178.695
CRR073301Leaf 270.705
CRR073302Leaf 368.526
CRR073303Juvenile bud 166.321
CRR073304Juvenile bud 266.971
CRR073305Juvenile bud 374.027
CRR073306Third green 163.692
CRR073307Third green 253.122
CRR073308Third green 364.022
CRR073309Second white 136.075
CRR073310Second white 263.081
CRR073311Second white 360.657
CRR073312Silver flowering 146.634
CRR073313Silver flowering 239.063
CRR073314Silver flowering 344.503
CRR073315Gold flowering 148.529
CRR073316Gold flowering 264.643
CRR073317Gold flowering 330.359
CRR073318Tawny withering 162.546
CRR073319Tawny withering 245.946
CRR073320Tawny withering 355.277