Gene detail

Detail information of GWHGAAZE020143

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007224874.1	1.2365E-149	hypothetical protein PRUPE_ppa022710mg [Prunus persica]
COG	YP_005367780.1	2E-65	putative squalene--hopene cyclase
Swissprot	tr\|Q6BE23\|OXSC_CUCPE	5E-140	Probable oxidosqualene cyclase
trEMBL	tr\|M5XWK0\|M5XWK0_PRUPE	5E-150	Uncharacterized protein {ECO:0000313\|EMBL:EMJ26073.1}
TAIR10	AT2G07050.1	3E-115	cycloartenol synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	78088298	78092890	-
GWHAAZE00000005	mRNA	78088298	78092890	-
GWHAAZE00000005	exon	78092705	78092890	-
GWHAAZE00000005	exon	78091873	78092118	-
GWHAAZE00000005	exon	78090944	78091069	-
GWHAAZE00000005	exon	78090670	78090792	-
GWHAAZE00000005	exon	78089124	78089180	-
GWHAAZE00000005	exon	78088862	78088908	-
GWHAAZE00000005	exon	78088298	78088460	-
GWHAAZE00000005	CDS	78092705	78092890	-
GWHAAZE00000005	CDS	78091873	78092118	-
GWHAAZE00000005	CDS	78090944	78091069	-
GWHAAZE00000005	CDS	78090670	78090792	-
GWHAAZE00000005	CDS	78089124	78089180	-
GWHAAZE00000005	CDS	78088862	78088908	-
GWHAAZE00000005	CDS	78088298	78088460	-

Transcript Sequence
>GWHTAAZE020165 ATGTACGTACTTGAAACAGGACGTATGTGGTGCCACACTCGGATGGTGTACCTGCCTATGTCGTATTTATACGGGAAGAGGTTCGTAGGACCGATAAATTCCACTGTTTTATCACTAAGGAGAGAGCTGTATACACAGCCCTATGATCAAATCGACTGGGACTTGGCTAGAAATCAATGTGCTAAGGAAGATCTATATTGCCCACATCCACTAATACAAGACATCCTTTGGGGTGGTCTACACAAGTTTGCGGAACCTCTTCTAAGGAAATGGCCATTCTCTAAGCTAAGGCACAAAGCACTCAATACTGTAATGCAACATATCCATCATGAAGATGAAAACACTCACTATATCTGCCTTGGACCCGTCGATAAGGTAACTAACTCTCTTCGTTTTTCTCACAATTGTAACTTTCTACTTCTGTACAAATCTGGATATAATGGATCTCAGTTATGGGATGTTGTTTTTGCTGTTCAAGCAACACTTGCCACCAACATCACTGATGATGAATATGGTTCAGTGCTTAGAAAAGCACATAATTTTATTAAAGTCTCACAGGTCAAGGAAAACAGCTCTAGCGATCTTAGTTTTTGGTATCGGCACATTTCTAAGGGGGGATGGACTTTCTCAACGTGGGAAAATGGTTGGCCCGTTTCGGATTGCACTGCAGAAGGTTTGAAGAACAGTAATGGAGGTTTTGCATCATATGAGCCCACAAGATCTTACCCTTGGCTTGAGATGATCAATCCGGTTGAACTATTCGGGGATGTAATGATTGATTATCAGTACGTAGAGTGCACATCTTCAGCAATTCAAGGCCTTGGCATGTTTATGAAATTGCATCCGGGACATAGGCAGAGAGAAATCGAAGCATGTATTGCAAAAGCCCTTGATTTCATTCAGACCATACAATTACCTGATGGCTCATGGTTTGTACTTTGCCTTTAA

Network for GWHGAAZE020143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01853	CAS1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.040
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.935
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	2.161
SRP173429	SRR8316895	Juvenile bud stage	0.579
	SRR8316896	Juvenile bud stage	0.765
	SRR8316897	Juvenile bud stage	0.145
	SRR8316894	Third green stage	0.039
	SRR8316900	Third green stage	0.303
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.077
	SRR8316902	Silver flowering stage	0.096
	SRR8316904	Silver flowering stage	0.070
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.322
	SRR8316907	Gold flowering stage	0.880
	SRR8316908	Gold flowering stage	0.058
SRP132670	SRR6706286	Control	0.054
	SRR6706287	Light intensity 50%	0.096
	SRR6706288	Light intensity 20%	0.086
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.617
	CNS0095593	Slightly white alabastrum(diploid) 2	0.452
	CNS0095594	Slightly white alabastrum(diploid) 3	0.487
	CNS0095595	Whole white alabastrum(diploid) 2	0.359
	CNS0095596	Whole white alabastrum(diploid) 3	0.046
	CNS0095597	Whole white alabastrum(diploid) 4	0.476
	CNS0095598	Silvery flower (diploied) 1	0.186
	CNS0095599	Silvery flower (diploied) 2	0.029
	CNS0095600	Silvery flower (diploied) 3	0.052
	CNS0095601	Golden flower (diploid) 1	0.080
	CNS0095602	Golden flower (diploid) 2	0.354
	CNS0095603	Golden flower (diploid) 3	0.159
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.049
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.359
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.110
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.052
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.045
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.026
	CNS0095612	Silvery flower (tetraploid) 3	0.028
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.119
CRA001975	CRR073297	Stem 1	0.159
	CRR073298	Stem 2	0.137
	CRR073299	Stem 3	0.035
	CRR073300	Leaf 1	0.188
	CRR073301	Leaf 2	0.131
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.021
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.110
	CRR073309	Second white 1	0.294
	CRR073310	Second white 2	0.157
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.024
	CRR073313	Silver flowering 2	0.112
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.035
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.165
	CRR073319	Tawny withering 2	0.755
	CRR073320	Tawny withering 3	0.436