Detail information of GWHGAAZE020119


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFK41844.13.3681E-13unknown [Lotus japonicus]
trEMBLtr|I3SNK2|I3SNK2_LOTJA1E-13Uncharacterized protein {ECO:0000313|EMBL:AFK41844.1}
TAIR10AT1G10590.27E-10Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene7724386477244181+
GWHAAZE00000005mRNA7724386477244181+
GWHAAZE00000005exon7724386477244181+
GWHAAZE00000005CDS7724386477244181+
Transcript Sequence

Network for GWHGAAZE020119

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K07466RFA1, RPA1, rpa DNA replication map03030
Nucleotide excision repairmap03420
Mismatch repairmap03430
Homologous recombinationmap03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.242
SRR3591706second leaf1.324
SRR3591707mature leaf2.148
SRR3591708Shoot apex18.749
SRR3591709Stem8.532
SRR3591710White floral bud6.339
SRR3591711White flower6.965
SRR3591712Green floral bud9.472
SRR3591713Yellow flower4.308
SRP173429 SRR8316895Juvenile bud stage 6.727
SRR8316896Juvenile bud stage 8.866
SRR8316897Juvenile bud stage 1.574
SRR8316894Third green stage 3.419
SRR8316900Third green stage 15.434
SRR8316901Third green stage 12.434
SRR8316898Complete white stage 1.251
SRR8316899Complete white stage 5.993
SRR8316903Complete white stage 3.819
SRR8316902Silver flowering stage1.628
SRR8316904Silver flowering stage3.259
SRR8316905Silver flowering stage1.695
SRR8316906Gold flowering stage 2.297
SRR8316907Gold flowering stage 2.541
SRR8316908Gold flowering stage 1.199
SRP132670SRR6706286Control10.503
SRR6706287Light intensity 50%10.758
SRR6706288Light intensity 20%12.107
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.542
CNS0095593Slightly white alabastrum(diploid) 219.288
CNS0095594Slightly white alabastrum(diploid) 326.889
CNS0095595Whole white alabastrum(diploid) 230.955
CNS0095596Whole white alabastrum(diploid) 333.863
CNS0095597Whole white alabastrum(diploid) 430.965
CNS0095598Silvery flower (diploied) 19.594
CNS0095599Silvery flower (diploied) 28.369
CNS0095600Silvery flower (diploied) 37.382
CNS0095601Golden flower (diploid) 14.693
CNS0095602Golden flower (diploid) 23.094
CNS0095603Golden flower (diploid) 33.545
CNS0095604Slightly white alabastrum(tetraploid) 15.330
CNS0095605Slightly white alabastrum(tetraploid) 25.182
CNS0095606Slightly white alabastrum(tetraploid) 31.180
CNS0095607Whole white alabastrum(tetraploid) 110.714
CNS0095608Whole white alabastrum(tetraploid) 28.708
CNS0095609Whole white alabastrum(tetraploid) 36.426
CNS0095610Silvery flower (tetraploid) 12.808
CNS0095611Silvery flower (tetraploid) 22.169
CNS0095612Silvery flower (tetraploid) 32.076
CNS0095613Golden flower (tetraploid) 11.352
CNS0095614Golden flower (tetraploid) 21.691
CNS0095615Golden flower (tetraploid) 30.222
CRA001975CRR073297Stem 16.946
CRR073298Stem 24.339
CRR073299Stem 36.561
CRR073300Leaf 115.287
CRR073301Leaf 211.743
CRR073302Leaf 37.227
CRR073303Juvenile bud 112.997
CRR073304Juvenile bud 29.448
CRR073305Juvenile bud 37.064
CRR073306Third green 13.672
CRR073307Third green 26.248
CRR073308Third green 32.966
CRR073309Second white 10.430
CRR073310Second white 21.979
CRR073311Second white 30.346
CRR073312Silver flowering 13.303
CRR073313Silver flowering 20.523
CRR073314Silver flowering 32.384
CRR073315Gold flowering 13.345
CRR073316Gold flowering 21.816
CRR073317Gold flowering 31.620
CRR073318Tawny withering 17.243
CRR073319Tawny withering 26.918
CRR073320Tawny withering 33.047