Gene detail

Detail information of GWHGAAZE020117

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011078189.1	2.9597E-138	PREDICTED: 26S proteasome regulatory subunit RPN13 [Sesamum indicum]
COG	YP_002759750.1	4E-15	putative protein kinase
Swissprot	tr\|O48726\|RPN13_ARATH	2E-110	26S proteasome regulatory subunit RPN13
trEMBL	tr\|K4CCF6\|K4CCF6_SOLLC	1E-136	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc07g017400.2.1}
TAIR10	AT2G26590.3	4E-92	regulatory particle non-ATPase 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	77172205	77191135	+
GWHAAZE00000005	mRNA	77172205	77191135	+
GWHAAZE00000005	exon	77172205	77172237	+
GWHAAZE00000005	exon	77172402	77172494	+
GWHAAZE00000005	exon	77172589	77172648	+
GWHAAZE00000005	exon	77173079	77173117	+
GWHAAZE00000005	exon	77173203	77173277	+
GWHAAZE00000005	exon	77173367	77173433	+
GWHAAZE00000005	exon	77173877	77173958	+
GWHAAZE00000005	exon	77178928	77179043	+
GWHAAZE00000005	exon	77179144	77179167	+
GWHAAZE00000005	exon	77180462	77180562	+
GWHAAZE00000005	exon	77182304	77182358	+
GWHAAZE00000005	exon	77187103	77187347	+
GWHAAZE00000005	exon	77187771	77187906	+
GWHAAZE00000005	exon	77188581	77188720	+
GWHAAZE00000005	exon	77189997	77190099	+
GWHAAZE00000005	exon	77190828	77191135	+
GWHAAZE00000005	CDS	77172205	77172237	+
GWHAAZE00000005	CDS	77172402	77172494	+
GWHAAZE00000005	CDS	77172589	77172648	+
GWHAAZE00000005	CDS	77173079	77173117	+
GWHAAZE00000005	CDS	77173203	77173277	+
GWHAAZE00000005	CDS	77173367	77173433	+
GWHAAZE00000005	CDS	77173877	77173958	+
GWHAAZE00000005	CDS	77178928	77179043	+
GWHAAZE00000005	CDS	77179144	77179167	+
GWHAAZE00000005	CDS	77180462	77180562	+
GWHAAZE00000005	CDS	77182304	77182358	+
GWHAAZE00000005	CDS	77187103	77187347	+
GWHAAZE00000005	CDS	77187771	77187906	+
GWHAAZE00000005	CDS	77188581	77188720	+
GWHAAZE00000005	CDS	77189997	77190099	+
GWHAAZE00000005	CDS	77190828	77191135	+

Transcript Sequence
>GWHTAAZE020139 ATGGATTCTTCAGAGGCCTTTCCCGCAGTTCAGGAAATTTTGCTGGAATTTCGTGCAGGTAAAATGAATATGGAGGGGAAACAGGTCATCCCTGATTCACGCAAGGGACTTGTTCGTATTGGAAGGGGTGAAGAGGGATTAGTACACTTTCAGTGGCTTGATCGGACTCAAAATGTTGTGGAAGATGATCAGATTATTTTCCCTGAGGAGGCAATTTTTGAAAAGGTTAATCAAGCATCTGGACGAGTATACATTTTGAAGTTCCATACCGACGATAGAAAGCTTTTCTTTTGGATGCAGGAGCCCAAAAATGACAATGATACGCAACTTTGTAACTCCGTCAACTTCTACATCAATCAACCAATGGAGTTTCCTGGTGAAGAGGAGCCTGATGCCTCAGCCCCCTTGCAAAATTCTGAAGACATGATTGAAGAAGATATCTCCTCAAGGGCTGGAAATTTGGTCGGCCCAAGCATGGGTGCAGAAGTAACGAGTGACGTAACGTCATCAGGGCCCGTAAAATTGTCTGATCTGCAACGAATATTAAGTAATATCGGGTCTTCAGATGGAGCTGTAGATCCAGATGGAGGATTGGGTCTAGCGGATATTTTGAAGCCTGAGTTGATATTTCCACTGATTGAAACGCTACCACTAGAACAAGGGCTTGCATCGTACTTACCTGAGGTAAACGTACTCCGGACCGGACAGATAGATCTTACTCAGTTCGGAGTAGACCCAAGTAAATCACATCCTAATTCACCAAAGAGCCAAAATAATGATCCGGGGAATAATGATCTTCGCATATTTACATACGAAGAGCTAAAGAAGGCGACGAAACAATTTCGCCCGGACAAAGTTCTTGAAGAAAGCTACTTCGGAATGGTTTATAAAGGAAAACTAGGTATCAAAGATAATCGAGGTTACTACGAAATGTTAGTTTCGATTCAGAAGTTTAATCCCGAAGAATTACAAGACGATGAAGAATGGATGGATGAGGTAAATTATTTAGGAAATCTCCGACACCTGAATCTGGTGAGGCTCGTTGGCTATTGTTGTGATTGTGCCCATCGATTTTTGGTTTACGAATTTATGGCATCTGGGAGCCTTGAAAAACACCTTTTTAATGAAGATGGTGAAACATTGAATTGGACAAGAAGAATGAAGATCGCTTTGGATGTTGCAAAAGGGCTTGCTTTTCTTCATGCTGCTGCGGAAAGACCTATCATTTTTCGCTATTTCAAGACCTCAAATATCTTGTTAGATAAGCATTTAAATGCAAAGCTTTTCGATATTGGACTTCAAAAGAATGAATATGTGTGTGTTTCAATGAGAGTCTTGGGATACACGGCTCCCGAGTATGGTCTCACTGGGCGTTTAACGGCGAAAAATAATGTGTATGGATTTGGGGTGATGCTACTCGAGATGTTAACGGGTAGGAGGGCCATCGACAACACCAAGTTCAAGACCAAGTCGTATAACTTGGTTCAGTTCGCGCTTTCGTGCCTCAACGACTACAATAAACTGAGATCGATATTAGACCCTCGAATTGTCCGGCAGTATCGTCCCAAAGATATCAAATTTGTGGCCCTTCTTGCGCTCGAATGCCTCAACCCCGATGATAAAGCCAGGCCGTCCATGAACGAAGTCGTCCAAGCCCTAGAAGCCTCTCAATATTAA

Network for GWHGAAZE020117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04683.14	Proteasom_Rpn13	20	101	4.50E-24
PF07714.18	PK_Tyr_Ser-Thr	285	553	2.40E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
K06691	RPN13	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.147
	SRR3591706	second leaf	13.615
	SRR3591707	mature leaf	15.653
	SRR3591708	Shoot apex	20.136
	SRR3591709	Stem	19.732
	SRR3591710	White floral bud	23.973
	SRR3591711	White flower	25.294
	SRR3591712	Green floral bud	26.122
	SRR3591713	Yellow flower	28.224
SRP173429	SRR8316895	Juvenile bud stage	31.398
	SRR8316896	Juvenile bud stage	102.303
	SRR8316897	Juvenile bud stage	38.299
	SRR8316894	Third green stage	40.161
	SRR8316900	Third green stage	27.353
	SRR8316901	Third green stage	47.369
	SRR8316898	Complete white stage	15.560
	SRR8316899	Complete white stage	38.075
	SRR8316903	Complete white stage	20.165
	SRR8316902	Silver flowering stage	14.498
	SRR8316904	Silver flowering stage	20.353
	SRR8316905	Silver flowering stage	8.539
	SRR8316906	Gold flowering stage	32.717
	SRR8316907	Gold flowering stage	29.425
	SRR8316908	Gold flowering stage	36.025
SRP132670	SRR6706286	Control	37.348
	SRR6706287	Light intensity 50%	43.680
	SRR6706288	Light intensity 20%	31.820
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.100
	CNS0095593	Slightly white alabastrum(diploid) 2	27.223
	CNS0095594	Slightly white alabastrum(diploid) 3	79.584
	CNS0095595	Whole white alabastrum(diploid) 2	21.126
	CNS0095596	Whole white alabastrum(diploid) 3	17.922
	CNS0095597	Whole white alabastrum(diploid) 4	17.932
	CNS0095598	Silvery flower (diploied) 1	20.978
	CNS0095599	Silvery flower (diploied) 2	18.978
	CNS0095600	Silvery flower (diploied) 3	24.824
	CNS0095601	Golden flower (diploid) 1	18.595
	CNS0095602	Golden flower (diploid) 2	22.803
	CNS0095603	Golden flower (diploid) 3	22.553
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.740
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.594
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.572
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.124
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.318
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.777
	CNS0095610	Silvery flower (tetraploid) 1	31.326
	CNS0095611	Silvery flower (tetraploid) 2	25.395
	CNS0095612	Silvery flower (tetraploid) 3	27.328
	CNS0095613	Golden flower (tetraploid) 1	23.835
	CNS0095614	Golden flower (tetraploid) 2	25.227
	CNS0095615	Golden flower (tetraploid) 3	29.990
CRA001975	CRR073297	Stem 1	54.778
	CRR073298	Stem 2	96.483
	CRR073299	Stem 3	59.986
	CRR073300	Leaf 1	23.247
	CRR073301	Leaf 2	22.828
	CRR073302	Leaf 3	21.748
	CRR073303	Juvenile bud 1	21.647
	CRR073304	Juvenile bud 2	16.640
	CRR073305	Juvenile bud 3	17.666
	CRR073306	Third green 1	12.829
	CRR073307	Third green 2	17.156
	CRR073308	Third green 3	13.615
	CRR073309	Second white 1	9.503
	CRR073310	Second white 2	14.193
	CRR073311	Second white 3	11.361
	CRR073312	Silver flowering 1	9.385
	CRR073313	Silver flowering 2	7.922
	CRR073314	Silver flowering 3	8.573
	CRR073315	Gold flowering 1	13.017
	CRR073316	Gold flowering 2	15.259
	CRR073317	Gold flowering 3	5.636
	CRR073318	Tawny withering 1	18.295
	CRR073319	Tawny withering 2	20.418
	CRR073320	Tawny withering 3	16.867