Gene detail

Detail information of GWHGAAZE020093

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094049.1	0	PREDICTED: U-box domain-containing protein 35-like [Sesamum indicum]
COG	YP_008151634.1	3E-24	hypothetical protein SCE1572_26190
Swissprot	tr\|Q9SW11\|PUB35_ARATH	1E-159	Serine/threonine-protein kinase
trEMBL	tr\|A0A022QCS3\|A0A022QCS3_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU25756.1}
TAIR10	AT2G24370.1	0	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	76517676	76526395	+
GWHAAZE00000005	mRNA	76517676	76526395	+
GWHAAZE00000005	exon	76517676	76517856	+
GWHAAZE00000005	exon	76518418	76518521	+
GWHAAZE00000005	exon	76519902	76520023	+
GWHAAZE00000005	exon	76520170	76520390	+
GWHAAZE00000005	exon	76521106	76521160	+
GWHAAZE00000005	exon	76521663	76521948	+
GWHAAZE00000005	exon	76522751	76522852	+
GWHAAZE00000005	exon	76523703	76524131	+
GWHAAZE00000005	exon	76525688	76526395	+
GWHAAZE00000005	CDS	76517676	76517856	+
GWHAAZE00000005	CDS	76518418	76518521	+
GWHAAZE00000005	CDS	76519902	76520023	+
GWHAAZE00000005	CDS	76520170	76520390	+
GWHAAZE00000005	CDS	76521106	76521160	+
GWHAAZE00000005	CDS	76521663	76521948	+
GWHAAZE00000005	CDS	76522751	76522852	+
GWHAAZE00000005	CDS	76523703	76524131	+
GWHAAZE00000005	CDS	76525688	76526395	+

Transcript Sequence
>GWHTAAZE020115 ATGGCAAATCTTAAATCTGGATCAATTGGAGAGAAGAAATTGGAGACAGTAACAGTGGCAATAGACAAGGACAAAGGAAGCCAATATGCATTGAAATGGGCAGTTGATAATCTTCTTGGCAGGGGCAAAAGTGTAATTTTGCTACATATTAATCAAAGGCCTTGTTCTATTCCCCCAAAAGTGGCAAACTATGATGAAGAACTAATAAAAACATATAGAAGACCAGTTGATAATCAGTCCAAGGAGTTGTTCCTTCCTTTTCGTTGCTTTTGTACCCGCAAAGATATACAAGTGACAGAAGTAATAGCAGAAGACACCGATATAGTGAAAGGCATATGTGACTATGTAAGGGTCAACTTAATTGAGACACTTGTACTTGGTACCCCTACCAAGAATGCCTTTGTTAGAAGATTCAAGACTGCAGATATTCCTAGCAGCGTTTCAAAATCGGCACCAGAGTTTTGCACGATATACATCATCTCCAAAGGCAAAATTTCGACAGTTCGATCTGCCTCCCTTCCAGTCCCTAACCCAGGCCCTCGTAGCCATTTCCATGCCCAAAACCACTCCCTTCGGAATCCTCCCAATGACACACGTCCAATGCAACCCAACAACAGCACAAGAGGAGCACTTGATAGGTCTCCATTTGCGTCTTCTCACATCCCGGATGACCTGGAGATCAAGTCACCGTTTACTAGAGCTAAAGCTTCCAACAAATCATATGGAGAGCTCTCCTTGCCTGATACAGACATATCATTCGTAAGCTCAGGCAGGCCAAGCACGGAACGCATGTTCCCTTCATTCGGCGATGATATCAGCTCTGCTCCTCGACTCTCATCCAGCTCAGACACAGAAAACAGAATAAGTTTTGGAGGGTCACCATTTGCAGGAAAGTCAATTGATGTAAATAATTTGCTCGGAGCCTTTGGAAGCTCTGATATTAGCAGCGTGTCATGGTCCTCCTCACAGGATGAAGTGGAAGCAGAAATGAGAAAGCTCAAACAAGAACTCAAGCAGACAATGGACATGTACAGCACAGCGTGCAAAGAAGCGCTCTCTGCAAAACAGAAGGCAATGGAACTTCATCAATGGAAAATGGAGAAACAACAGAGGCTAGAAGAGGCAAGACTAGCTGAGGAAGCGGCACTGGCAATCGCAGAGAAAGAGAAAGCAAAGTGTAGAATGGCCATTGAAGCAGCTGAGGCAGCTCAAAGGCTAGCAGAACTCGAAGCCCAAAAGAGGATCAACGCAGAGATGAAAGCACTCAGAGAAGCCGAGGAGAGGAAGAAGGTAATGGACTCACTAGCCCACCAAGATATTAGGTACCGCAAGTACTCAATAGAGGAGATTGAAGCGGCGACCGAGTTCTTCGCCGATTCACGGAAAATCGGGGAAGGTGGTTATGGGCCAGTATATAGGTGTTCTTTGGATCATACGCCAGTGGCGGTTAAAGTTCTTCGGCCAGATGCGGCTCAAGGAAGATCGCAATTTCAGCAAGAGGTGGAAGTTCTTAGCTGCATACGACATCCCAACATGGTTCTCCTCCTCGGAGCCTGCCCAGAGTATGGTTGCCTAGTCTACGAGTACATGGCCAACGGTAGCTTAGAAGACCGCCTCTTCCGGAGAGGAAACACGCCGGTGCTTCCTTGGCAAGCCCGGTTCCGTATAGCTGCCGAAATCGGCACCGGCCTCCTTTTCCTCCACCAAACCAAACCCGAACCGCTAGTCCACCGCGATCTAAAACCGGGCAATATTTTGCTCGACCGCAATTATGTCAGCAAAATTAGTGACGTTGGTTTAGCCCGTCTTGTTCCTCCTTCTGTAGCCGATAGTGTCACACAATATCGAATGACATCAACAGCTGGGACTTTCTGTTATATAGATCCTGAGTACCAACAAACCGGTATGCTCGGGATAAAATCCGATATATATTCACTAGGGGTCATGCTTTTACAAATAATAACAGCCAAGCCACCAATGGGTCTAACCCATCATGTTGAACGGTCAATAGAGAACGGAACGTTCGTGGATGCACTTGACCCGAAGGTTCGAGATTGGCCGGTTGAAGAGGCCTTAAAATTCGCTAAATTAGCTCTTAAATGCGCTGAGATGAGGCGTAAAGATAGGCCAGATCTGGCCAATGTTGTGTTACCTGAGCTTAACAGGTTAAGATTGCTTGCAGAAGAATCAATGCCAAGCTACTCATAG

Network for GWHGAAZE020093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00582.27	Usp	15	137	7.40E-08
PF00069.26	Pkinase	458	715	1.30E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.862
	SRR3591706	second leaf	0.604
	SRR3591707	mature leaf	1.080
	SRR3591708	Shoot apex	0.452
	SRR3591709	Stem	1.814
	SRR3591710	White floral bud	94.202
	SRR3591711	White flower	5.919
	SRR3591712	Green floral bud	51.344
	SRR3591713	Yellow flower	3.188
SRP173429	SRR8316895	Juvenile bud stage	0.584
	SRR8316896	Juvenile bud stage	0.558
	SRR8316897	Juvenile bud stage	0.290
	SRR8316894	Third green stage	0.668
	SRR8316900	Third green stage	17.962
	SRR8316901	Third green stage	14.138
	SRR8316898	Complete white stage	0.181
	SRR8316899	Complete white stage	0.580
	SRR8316903	Complete white stage	0.618
	SRR8316902	Silver flowering stage	1.377
	SRR8316904	Silver flowering stage	2.201
	SRR8316905	Silver flowering stage	0.806
	SRR8316906	Gold flowering stage	0.727
	SRR8316907	Gold flowering stage	0.944
	SRR8316908	Gold flowering stage	0.949
SRP132670	SRR6706286	Control	18.661
	SRR6706287	Light intensity 50%	19.584
	SRR6706288	Light intensity 20%	16.742
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.945
	CNS0095593	Slightly white alabastrum(diploid) 2	2.558
	CNS0095594	Slightly white alabastrum(diploid) 3	1.306
	CNS0095595	Whole white alabastrum(diploid) 2	40.729
	CNS0095596	Whole white alabastrum(diploid) 3	45.514
	CNS0095597	Whole white alabastrum(diploid) 4	66.910
	CNS0095598	Silvery flower (diploied) 1	2.759
	CNS0095599	Silvery flower (diploied) 2	9.768
	CNS0095600	Silvery flower (diploied) 3	3.360
	CNS0095601	Golden flower (diploid) 1	5.390
	CNS0095602	Golden flower (diploid) 2	2.811
	CNS0095603	Golden flower (diploid) 3	2.129
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.969
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.354
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.028
	CNS0095607	Whole white alabastrum(tetraploid) 1	71.951
	CNS0095608	Whole white alabastrum(tetraploid) 2	106.960
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.262
	CNS0095610	Silvery flower (tetraploid) 1	4.125
	CNS0095611	Silvery flower (tetraploid) 2	9.278
	CNS0095612	Silvery flower (tetraploid) 3	26.538
	CNS0095613	Golden flower (tetraploid) 1	3.614
	CNS0095614	Golden flower (tetraploid) 2	2.199
	CNS0095615	Golden flower (tetraploid) 3	9.120
CRA001975	CRR073297	Stem 1	3.202
	CRR073298	Stem 2	1.629
	CRR073299	Stem 3	0.735
	CRR073300	Leaf 1	35.878
	CRR073301	Leaf 2	16.668
	CRR073302	Leaf 3	4.732
	CRR073303	Juvenile bud 1	34.358
	CRR073304	Juvenile bud 2	17.586
	CRR073305	Juvenile bud 3	4.127
	CRR073306	Third green 1	14.969
	CRR073307	Third green 2	14.196
	CRR073308	Third green 3	16.264
	CRR073309	Second white 1	0.396
	CRR073310	Second white 2	4.589
	CRR073311	Second white 3	3.837
	CRR073312	Silver flowering 1	16.528
	CRR073313	Silver flowering 2	21.980
	CRR073314	Silver flowering 3	6.200
	CRR073315	Gold flowering 1	8.129
	CRR073316	Gold flowering 2	4.287
	CRR073317	Gold flowering 3	0.484
	CRR073318	Tawny withering 1	18.939
	CRR073319	Tawny withering 2	18.192
	CRR073320	Tawny withering 3	13.976