Gene detail

Detail information of GWHGAAZE020090

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009759671.1	2.9581E-168	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RLK [Nicotiana sylvestris]
COG	YP_005269820.1	9E-12	serine/threonine-protein kinase PrkC
Swissprot	tr\|C0LGU0\|RLK_ARATH	5E-132	Probable LRR receptor-like serine/threonine-protein kinase RLK (Precursor)
trEMBL	tr\|A0A068UW33\|A0A068UW33_COFCA	5E-163	Coffea canephora DH200=94 genomic scaffold, scaffold_67 {ECO:0000313\|EMBL:CDP12489.1}
TAIR10	AT2G07040.1	2E-110	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	76486915	76488242	+
GWHAAZE00000005	mRNA	76486915	76488242	+
GWHAAZE00000005	exon	76486915	76487191	+
GWHAAZE00000005	exon	76487575	76488242	+
GWHAAZE00000005	CDS	76486915	76487191	+
GWHAAZE00000005	CDS	76487575	76488242	+

Transcript Sequence
>GWHTAAZE020112 ATGCCTGATTTGTTGAAGGCATCGGCCGAGATACTGGGTGGTGGGATGCTTGGTTCCACTTATAAAGCCGCTCTTAGTGTCGATTCAGTGATGGTGGTGAAGAGGTTTAGACACATGAATAATGTGGGGAAAGAAGAGTACCAAGAGCATATGAGAAGGTTAGGGAGGTTAAGGCATCCGAATTTACTTCCACTTGTGGCCTTTTACTATAGAAAAGAGGAGAAGCTCTTGGTTTCTGATTATGTTAGCAATGTCAGCTTGGCTATTCACTTACATGGCAGCCATTCTAAAGGCCGCCTTGATTGGCAAACCAGGTTGAAAATAGTGAAAGGAGTAGCTAAAGGCCTCTTATACCTCTACAATGAGCTCCCAAGCCTAATTGCACCACATGGCCACCTTAAATCCTCCAATGTTCTTCTCAACCAATCGTTCGAGCCTTTGCTTACTGACTACGGCTTGGTTCCAGTAGTAAACCAAGAACACGCGCAAGAAATAATGGTAGCATATAAGTCCCCGGAGTACAAGCAAAACGGTCGAATAACAAGAAAAACCGACATTTGGTCCCTTGGGATGTTGATACTCGAGATACTAACCGGTAAGTTCCCAGCCCACTCATTGCAACAAGGCAAAGGAAGCGACATTGAGGATTTGGGAACTTGGGTACAGTCTGTTGTTCAAGAAGAATTGAGTCTCGAATTGTTTGATAAAGAGATAAGAGGGAACAAGAACAGCGAAGGCGAGATGATGAAGCTTTTGAAGATAGGATTGAGTTGTTGCGAACCTGATGTGGAGAAGAGGTGGGATATAAAGGAAGTTGTGGAGAAGATTGAAGAGTTAAGAGAGAAAGATGGTGATGACGATTTCTACTCTTCATATGCAAGTGAAGGGGACTTGCGATCTAAAAGAGGATTGTCTGAGGATTTCTCTATTCAAGTTAATGGTTAA

Network for GWHGAAZE020090

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	10	274	8.20E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.199
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.097
	SRR3591709	Stem	0.586
	SRR3591710	White floral bud	134.818
	SRR3591711	White flower	6.915
	SRR3591712	Green floral bud	57.708
	SRR3591713	Yellow flower	5.249
SRP173429	SRR8316895	Juvenile bud stage	0.035
	SRR8316896	Juvenile bud stage	0.141
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.166
	SRR8316900	Third green stage	12.892
	SRR8316901	Third green stage	6.623
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.249
	SRR8316903	Complete white stage	0.054
	SRR8316902	Silver flowering stage	1.631
	SRR8316904	Silver flowering stage	2.942
	SRR8316905	Silver flowering stage	0.373
	SRR8316906	Gold flowering stage	0.234
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.106
SRP132670	SRR6706286	Control	10.225
	SRR6706287	Light intensity 50%	14.185
	SRR6706288	Light intensity 20%	11.473
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.608
	CNS0095593	Slightly white alabastrum(diploid) 2	0.927
	CNS0095594	Slightly white alabastrum(diploid) 3	0.422
	CNS0095595	Whole white alabastrum(diploid) 2	33.443
	CNS0095596	Whole white alabastrum(diploid) 3	29.828
	CNS0095597	Whole white alabastrum(diploid) 4	73.001
	CNS0095598	Silvery flower (diploied) 1	5.176
	CNS0095599	Silvery flower (diploied) 2	20.749
	CNS0095600	Silvery flower (diploied) 3	4.706
	CNS0095601	Golden flower (diploid) 1	7.167
	CNS0095602	Golden flower (diploid) 2	3.774
	CNS0095603	Golden flower (diploid) 3	2.809
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.853
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.850
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	64.325
	CNS0095608	Whole white alabastrum(tetraploid) 2	123.157
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.741
	CNS0095610	Silvery flower (tetraploid) 1	3.247
	CNS0095611	Silvery flower (tetraploid) 2	12.238
	CNS0095612	Silvery flower (tetraploid) 3	32.776
	CNS0095613	Golden flower (tetraploid) 1	5.890
	CNS0095614	Golden flower (tetraploid) 2	0.575
	CNS0095615	Golden flower (tetraploid) 3	13.439
CRA001975	CRR073297	Stem 1	4.191
	CRR073298	Stem 2	2.852
	CRR073299	Stem 3	0.797
	CRR073300	Leaf 1	27.697
	CRR073301	Leaf 2	9.117
	CRR073302	Leaf 3	5.252
	CRR073303	Juvenile bud 1	42.542
	CRR073304	Juvenile bud 2	27.763
	CRR073305	Juvenile bud 3	3.480
	CRR073306	Third green 1	17.508
	CRR073307	Third green 2	16.365
	CRR073308	Third green 3	22.133
	CRR073309	Second white 1	0.936
	CRR073310	Second white 2	5.312
	CRR073311	Second white 3	3.304
	CRR073312	Silver flowering 1	20.864
	CRR073313	Silver flowering 2	18.172
	CRR073314	Silver flowering 3	10.187
	CRR073315	Gold flowering 1	21.306
	CRR073316	Gold flowering 2	6.906
	CRR073317	Gold flowering 3	3.502
	CRR073318	Tawny withering 1	18.856
	CRR073319	Tawny withering 2	25.197
	CRR073320	Tawny withering 3	19.106