Detail information of GWHGAAZE020063


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP12489.10unnamed protein product [Coffea canephora]
COGYP_004429344.13E-13leucine-rich repeat-containing protein
Swissprottr|C0LGU0|RLK_ARATH0Probable LRR receptor-like serine/threonine-protein kinase RLK (Precursor)
trEMBLtr|A0A068UW33|A0A068UW33_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_67 {ECO:0000313|EMBL:CDP12489.1}
TAIR10AT5G35390.13E-143Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene7499561274999684-
GWHAAZE00000005mRNA7499561274999684-
GWHAAZE00000005exon7499561274995949-
GWHAAZE00000005exon7499605674996277-
GWHAAZE00000005exon7499666174997275-
GWHAAZE00000005exon7499902474999684-
GWHAAZE00000005CDS7499902474999684-
GWHAAZE00000005CDS7499666174997275-
GWHAAZE00000005CDS7499605674996277-
GWHAAZE00000005CDS7499561274995949-
Transcript Sequence

Network for GWHGAAZE020063

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_226692.50E-08
PF13855.7LRR_81211805.50E-07
PF00069.26Pkinase3434835.40E-12
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-III

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0005515molecular_functionprotein binding
GO:0004713molecular_functionprotein tyrosine kinase activity
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.154
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.105
SRR3591709Stem0.734
SRR3591710White floral bud99.904
SRR3591711White flower5.373
SRR3591712Green floral bud43.126
SRR3591713Yellow flower3.987
SRP173429 SRR8316895Juvenile bud stage 0.039
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.055
SRR8316900Third green stage 7.860
SRR8316901Third green stage 3.667
SRR8316898Complete white stage 0.061
SRR8316899Complete white stage 0.160
SRR8316903Complete white stage 0.034
SRR8316902Silver flowering stage0.693
SRR8316904Silver flowering stage1.635
SRR8316905Silver flowering stage0.395
SRR8316906Gold flowering stage 0.265
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.095
SRP132670SRR6706286Control6.782
SRR6706287Light intensity 50%8.031
SRR6706288Light intensity 20%6.740
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.652
CNS0095593Slightly white alabastrum(diploid) 20.222
CNS0095594Slightly white alabastrum(diploid) 30.254
CNS0095595Whole white alabastrum(diploid) 217.797
CNS0095596Whole white alabastrum(diploid) 317.123
CNS0095597Whole white alabastrum(diploid) 446.432
CNS0095598Silvery flower (diploied) 13.178
CNS0095599Silvery flower (diploied) 211.749
CNS0095600Silvery flower (diploied) 32.358
CNS0095601Golden flower (diploid) 14.091
CNS0095602Golden flower (diploid) 22.462
CNS0095603Golden flower (diploid) 32.569
CNS0095604Slightly white alabastrum(tetraploid) 12.589
CNS0095605Slightly white alabastrum(tetraploid) 24.100
CNS0095606Slightly white alabastrum(tetraploid) 30.100
CNS0095607Whole white alabastrum(tetraploid) 146.393
CNS0095608Whole white alabastrum(tetraploid) 278.113
CNS0095609Whole white alabastrum(tetraploid) 323.579
CNS0095610Silvery flower (tetraploid) 12.054
CNS0095611Silvery flower (tetraploid) 27.927
CNS0095612Silvery flower (tetraploid) 320.652
CNS0095613Golden flower (tetraploid) 13.012
CNS0095614Golden flower (tetraploid) 21.009
CNS0095615Golden flower (tetraploid) 311.599
CRA001975CRR073297Stem 11.873
CRR073298Stem 21.354
CRR073299Stem 30.639
CRR073300Leaf 117.047
CRR073301Leaf 25.943
CRR073302Leaf 32.077
CRR073303Juvenile bud 126.722
CRR073304Juvenile bud 219.534
CRR073305Juvenile bud 32.138
CRR073306Third green 111.730
CRR073307Third green 212.282
CRR073308Third green 312.644
CRR073309Second white 10.516
CRR073310Second white 23.498
CRR073311Second white 32.644
CRR073312Silver flowering 113.763
CRR073313Silver flowering 212.567
CRR073314Silver flowering 36.923
CRR073315Gold flowering 113.404
CRR073316Gold flowering 24.092
CRR073317Gold flowering 31.669
CRR073318Tawny withering 115.586
CRR073319Tawny withering 217.200
CRR073320Tawny withering 313.035