Gene detail

Detail information of GWHGAAZE020059

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094049.1	0	PREDICTED: U-box domain-containing protein 35-like [Sesamum indicum]
COG	YP_008151634.1	1E-25	hypothetical protein SCE1572_26190
Swissprot	tr\|Q8S8S7\|PUB34_ARATH	1E-117	Serine/threonine-protein kinase
trEMBL	tr\|A0A022QCS3\|A0A022QCS3_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU25756.1}
TAIR10	AT2G24370.1	2E-139	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	74962101	74964576	-
GWHAAZE00000005	mRNA	74962101	74964576	-
GWHAAZE00000005	exon	74962101	74962808	-
GWHAAZE00000005	exon	74964370	74964576	-
GWHAAZE00000005	CDS	74964370	74964576	-
GWHAAZE00000005	CDS	74962101	74962808	-

Transcript Sequence
>GWHTAAZE020081 ATGGACTCACTAGCCCACCAAGATATTAGGTACCGCAAGTACTCAATAGAGGAGATTGAAGCGGCGACCGAGTTCTTCGCCGATTCACGGAAAATCGGGGAAGGTGGTTATGGGCCAGTATATAGGTGTTCTTTGGATCATACGCCAGTGGCGGTTAAAGTTCTTCGGCCAGATGCGGCTCAAGGAAGATCGCAATTTCAGCAAGAGGTGGAAGTTCTTAGCTGCATACGACATCCCAACATGGTTCTCCTCCTCGGAGCCTGCCCAGAGTATGGTTGCCTAGTCTACGAGTACATGGCCAACGGTAGCTTAGAAGACCGCCTCTTCCGGAGAGGAAACACGCCGGTGCTTCCTTGGCAAGCCCGGTTCCGTATAGCTGCTGAAATCGGCACCGGCCTCCTTTTCCTCCACCAAACCAAACCCGAACCGCTAGTCCACCGCGATCTAAAACCCGGAAATATTTTGCTCGACCGCAATTATGTCAGCAAAATTAGTGATGTTGGTTTAGCCCGCCTTGTTCCTCCTTCTGTAGCCGATAGTGTCACACAATATCGAATGACATCAACGGCTGGGACTTTCTGTTATATAGATCCTGAGTACCAACAAACCGGTATGCTCGGGATAAAATCCGATATATATTCACTAGGGGTCATGCTTTTACAAATAATAACAGCCAAGCCACCAATGGGTCTAACCCATTATGTTGAACGGTCAATTGAGAACGGAACGTTCGTGGATGCACTTGACTCGAAGGTTCGAGATTGGCCGGTTGAAGAGGCCTTAAAATTCGCTAAATTAGCTCTTAAATGCGCTGAGATGAGGCGTAAAGATAGGCCAGATCTGGCCAATGTTGTGTTACCTGAGCTTAACAGGTTAAGATTGCTTGCAGAAGAATCAATGCCAAGCTACTCATAG

Network for GWHGAAZE020059

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	27	284	2.80E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.747
	SRR3591707	mature leaf	0.866
	SRR3591708	Shoot apex	0.298
	SRR3591709	Stem	1.127
	SRR3591710	White floral bud	71.374
	SRR3591711	White flower	6.101
	SRR3591712	Green floral bud	39.329
	SRR3591713	Yellow flower	3.622
SRP173429	SRR8316895	Juvenile bud stage	1.514
	SRR8316896	Juvenile bud stage	2.636
	SRR8316897	Juvenile bud stage	2.808
	SRR8316894	Third green stage	1.386
	SRR8316900	Third green stage	16.684
	SRR8316901	Third green stage	13.704
	SRR8316898	Complete white stage	0.450
	SRR8316899	Complete white stage	3.691
	SRR8316903	Complete white stage	1.419
	SRR8316902	Silver flowering stage	1.818
	SRR8316904	Silver flowering stage	3.532
	SRR8316905	Silver flowering stage	1.116
	SRR8316906	Gold flowering stage	3.046
	SRR8316907	Gold flowering stage	2.548
	SRR8316908	Gold flowering stage	3.919
SRP132670	SRR6706286	Control	14.229
	SRR6706287	Light intensity 50%	15.723
	SRR6706288	Light intensity 20%	13.998
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.850
	CNS0095593	Slightly white alabastrum(diploid) 2	3.956
	CNS0095594	Slightly white alabastrum(diploid) 3	2.462
	CNS0095595	Whole white alabastrum(diploid) 2	42.902
	CNS0095596	Whole white alabastrum(diploid) 3	49.766
	CNS0095597	Whole white alabastrum(diploid) 4	67.788
	CNS0095598	Silvery flower (diploied) 1	4.365
	CNS0095599	Silvery flower (diploied) 2	13.064
	CNS0095600	Silvery flower (diploied) 3	4.397
	CNS0095601	Golden flower (diploid) 1	4.883
	CNS0095602	Golden flower (diploid) 2	3.255
	CNS0095603	Golden flower (diploid) 3	2.787
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.436
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.215
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.823
	CNS0095607	Whole white alabastrum(tetraploid) 1	57.973
	CNS0095608	Whole white alabastrum(tetraploid) 2	70.338
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.543
	CNS0095610	Silvery flower (tetraploid) 1	5.314
	CNS0095611	Silvery flower (tetraploid) 2	8.847
	CNS0095612	Silvery flower (tetraploid) 3	17.394
	CNS0095613	Golden flower (tetraploid) 1	5.917
	CNS0095614	Golden flower (tetraploid) 2	3.350
	CNS0095615	Golden flower (tetraploid) 3	8.847
CRA001975	CRR073297	Stem 1	1.925
	CRR073298	Stem 2	1.613
	CRR073299	Stem 3	0.219
	CRR073300	Leaf 1	25.199
	CRR073301	Leaf 2	10.449
	CRR073302	Leaf 3	4.180
	CRR073303	Juvenile bud 1	25.129
	CRR073304	Juvenile bud 2	14.862
	CRR073305	Juvenile bud 3	4.376
	CRR073306	Third green 1	14.671
	CRR073307	Third green 2	10.219
	CRR073308	Third green 3	10.262
	CRR073309	Second white 1	0.666
	CRR073310	Second white 2	3.552
	CRR073311	Second white 3	1.790
	CRR073312	Silver flowering 1	8.738
	CRR073313	Silver flowering 2	12.282
	CRR073314	Silver flowering 3	5.495
	CRR073315	Gold flowering 1	8.473
	CRR073316	Gold flowering 2	3.536
	CRR073317	Gold flowering 3	1.010
	CRR073318	Tawny withering 1	13.878
	CRR073319	Tawny withering 2	9.675
	CRR073320	Tawny withering 3	9.844