Gene detail

Detail information of GWHGAAZE019962

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282341.3	0	PREDICTED: putative ATP-dependent RNA helicase DHX33 [Vitis vinifera]
COG	NP_439228.2	4E-124	ATP-dependent RNA helicase HrpA
Swissprot	tr\|Q38953\|DHX8_ARATH	0	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|F6GVM6\|F6GVM6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43988.1}
TAIR10	AT1G26370.1	0	RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	70826214	70832722	+
GWHAAZE00000005	mRNA	70826214	70832722	+
GWHAAZE00000005	exon	70826214	70826296	+
GWHAAZE00000005	exon	70826521	70826567	+
GWHAAZE00000005	exon	70826885	70826965	+
GWHAAZE00000005	exon	70827597	70827813	+
GWHAAZE00000005	exon	70828099	70828519	+
GWHAAZE00000005	exon	70828646	70828849	+
GWHAAZE00000005	exon	70829588	70829748	+
GWHAAZE00000005	exon	70829891	70830076	+
GWHAAZE00000005	exon	70830886	70831117	+
GWHAAZE00000005	exon	70831847	70832046	+
GWHAAZE00000005	exon	70832182	70832316	+
GWHAAZE00000005	exon	70832539	70832722	+
GWHAAZE00000005	CDS	70826214	70826296	+
GWHAAZE00000005	CDS	70826521	70826567	+
GWHAAZE00000005	CDS	70826885	70826965	+
GWHAAZE00000005	CDS	70827597	70827813	+
GWHAAZE00000005	CDS	70828099	70828519	+
GWHAAZE00000005	CDS	70828646	70828849	+
GWHAAZE00000005	CDS	70829588	70829748	+
GWHAAZE00000005	CDS	70829891	70830076	+
GWHAAZE00000005	CDS	70830886	70831117	+
GWHAAZE00000005	CDS	70831847	70832046	+
GWHAAZE00000005	CDS	70832182	70832316	+
GWHAAZE00000005	CDS	70832539	70832722	+

Transcript Sequence
>GWHTAAZE019984 TCTCTTGATCAGATTCAGAAGCATTACATATCTTCAATGTCCTTGGTTGCTTTATTTGTTCTATGTTATTCAGGAAAAGTAAGCAGGCATAAGATTCAGGAACAGAGAAAATCATTACCAATTGCTTCAGTGGAAAAGCGACTTGTGGAGGAGGTCAGAAATAATGATACGTTAATAATTGTTGGTGAAACTGGCTCTGGGAAAACAACACAGTTACCCCAGTATCTATTTAATGGGGGATTCTGCTGTGATGGGGGAATTGTTGGGATAACTCAACCTAGACGTGTTGCGGCTGTGACTGTTGCAAAACGGGTAGCTGAAGAATGTGGTGTTGAGTTGGGCCAAAAAGTTGGGTATTCTATCAGATTTGAGGATGTGACTTCCAGCTCAACAAGGATTAAGTACATGACAGATGGACTGCTATTGAGGGAAGCACTATTGGACCCTTATTTGTCTAGGTATTCAGTTATAATTGTTGACGAGGCTCACGAGCGAACTGTCCACACTGATGTTCTGCTCGGGTTGTTGAAGAGTGTACAGAAAGCTAGGTCTGGACGTTTCGTTAATGATCCTCCAAAAGTGGATAATACGAAGGCAAGCAATGGGATGCTCTTTAAGAAAGAAAATGAAGCACACAATGTGAGTATTCTGCAGCAATGTCGAGGCAGAAAATTTACTCCGTTGAAGTTGATCATCATGTCCGCTAGTTTGGATGCACGGAGTTTCTCGGAGTACTTTGGTGGTGCAAGAGCTGTTCATGTTCAGGGGCGACAATATCCGGTCGATATACTCTATACTCGTCAGCCAGAGACAGACTATGTAGATGCTGCACTAATTACTATATTTCAGATACATTTGGAGGAGGGTCCTGGTGATATACTTGTATTCCTGACTGGCCAAGAAGAGATTGAAGCTGTTGAAAGGCTTGTTAATGAGCGTCTTCGACAATTACCTCAAGGCAATCAGAAGCTGTTAGTCTTTCCTATATTCTCATCACTTCCCTCTGAAAAGCAGTTGAAAGTTTTCATTCCTGCTCCAGTTGGATTTCGTAAGGTAATTCTGGCAACTAATATTGCAGAGACTTCAGTTACAATACCTGGAATCAAGTATGTCATTGACCCTGGATTGGTGAAAGCACGCAATTACTGTTCTAATACGGGGATAGAATCATTGATTATAGTTAAAACATCGAAGGCACAGGCTCTTCAAAGGAGTGGACGTGCAGGTCGTGAAGGACCAGGGAAATGCTTTCGCCTTTATCCGGAGAGTGAATTTGAGAGACTAAAAGATTCAACAGTGCCAGAGATCAAAAGATGCAACCTCTCTAATGTTATATTGCAGCTCAAGGTTCTTGGCGTCGATGATATAATTGGGTTTGACTTCATGGAAAAACCAGATAGGATGGCTATCATCAAATCATTGGAGTCGTTGTATTTGCTAGGTGCTCTCACAGAAGAAAGTACACTATCAGATCCAGTTGGGCATCAAATGGCCCGGCTACCAGTGGAGCCCATTAACGGGAAGGCTCTTATCCTTGCTAGTCAGTTCAATTGCTTGGAAGAAATGTTAATATCTGTTGCAATGCTCTCAGTTGAATCTATATTTTATGCCCCTCGTGAGAAGTTACAAGAGTCACGAACCGCATTGAGATCCTTCGCAAGTCCAGAGGGAGATCATCTGACTTTGCTAAATGTGTATCGTGCTTCTGAAGAATTCTTGGAGAAGAGCAAGATTGGTAACAGTAAAGAAAAAGCTGAAAAAAATCTTCGAAAATGGTGCAAAGAGAACTTCATTAATAGCCGCTCCCTAAGGCATGCTCGTGACATTCACAGTCAAATAAAGGGGAATGTGGAACGAATGGGTCTTCATGTTTCTTCATGCGGAGACGATATGCTACAGTTTTGTAGGTGCCTTGCCGCTTCCTTTTTCCTCAATGCAGCTTTGAAGCAGCCTGATGGTACTTACAGGGTTTTGGCAAGTGGTCAGACGGTGCAAATACACCCTTCTTCTGTGTTATTCAGGGCAAAACCAGAGTGCATAATTTTCGATGAATTAGTCCGGACTAATCAAAGTTACGTCCGCAACATTACTAGAATCGATTACTTGTGGTTACCTGAGCTGGCTCCGCAGTTCTATACATTGCACGATTAG

Network for GWHGAAZE019962

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00271.32	Helicase_C	281	411	1.60E-12
PF04408.24	HA2	473	597	8.10E-18
PF07717.17	OB_NTP_bind	636	710	6.00E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12818	DHX8, PRP22	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0004386	molecular_function	helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.419
	SRR3591706	second leaf	11.537
	SRR3591707	mature leaf	11.192
	SRR3591708	Shoot apex	18.088
	SRR3591709	Stem	18.438
	SRR3591710	White floral bud	26.589
	SRR3591711	White flower	26.278
	SRR3591712	Green floral bud	19.195
	SRR3591713	Yellow flower	24.792
SRP173429	SRR8316895	Juvenile bud stage	10.315
	SRR8316896	Juvenile bud stage	16.701
	SRR8316897	Juvenile bud stage	7.116
	SRR8316894	Third green stage	6.941
	SRR8316900	Third green stage	17.100
	SRR8316901	Third green stage	16.299
	SRR8316898	Complete white stage	11.091
	SRR8316899	Complete white stage	25.881
	SRR8316903	Complete white stage	17.138
	SRR8316902	Silver flowering stage	9.827
	SRR8316904	Silver flowering stage	16.977
	SRR8316905	Silver flowering stage	8.463
	SRR8316906	Gold flowering stage	25.849
	SRR8316907	Gold flowering stage	25.133
	SRR8316908	Gold flowering stage	25.326
SRP132670	SRR6706286	Control	18.755
	SRR6706287	Light intensity 50%	18.478
	SRR6706288	Light intensity 20%	18.998
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.032
	CNS0095593	Slightly white alabastrum(diploid) 2	8.435
	CNS0095594	Slightly white alabastrum(diploid) 3	8.271
	CNS0095595	Whole white alabastrum(diploid) 2	8.978
	CNS0095596	Whole white alabastrum(diploid) 3	8.582
	CNS0095597	Whole white alabastrum(diploid) 4	10.338
	CNS0095598	Silvery flower (diploied) 1	13.503
	CNS0095599	Silvery flower (diploied) 2	11.443
	CNS0095600	Silvery flower (diploied) 3	21.653
	CNS0095601	Golden flower (diploid) 1	10.190
	CNS0095602	Golden flower (diploid) 2	21.437
	CNS0095603	Golden flower (diploid) 3	20.776
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.730
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.573
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.754
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.923
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.431
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.708
	CNS0095610	Silvery flower (tetraploid) 1	20.643
	CNS0095611	Silvery flower (tetraploid) 2	21.151
	CNS0095612	Silvery flower (tetraploid) 3	21.638
	CNS0095613	Golden flower (tetraploid) 1	11.508
	CNS0095614	Golden flower (tetraploid) 2	19.658
	CNS0095615	Golden flower (tetraploid) 3	20.187
CRA001975	CRR073297	Stem 1	17.616
	CRR073298	Stem 2	15.112
	CRR073299	Stem 3	12.175
	CRR073300	Leaf 1	17.727
	CRR073301	Leaf 2	14.402
	CRR073302	Leaf 3	13.814
	CRR073303	Juvenile bud 1	14.294
	CRR073304	Juvenile bud 2	10.253
	CRR073305	Juvenile bud 3	15.405
	CRR073306	Third green 1	8.864
	CRR073307	Third green 2	8.580
	CRR073308	Third green 3	10.779
	CRR073309	Second white 1	10.304
	CRR073310	Second white 2	10.852
	CRR073311	Second white 3	15.374
	CRR073312	Silver flowering 1	12.897
	CRR073313	Silver flowering 2	11.183
	CRR073314	Silver flowering 3	11.444
	CRR073315	Gold flowering 1	6.217
	CRR073316	Gold flowering 2	9.849
	CRR073317	Gold flowering 3	6.851
	CRR073318	Tawny withering 1	9.081
	CRR073319	Tawny withering 2	8.974
	CRR073320	Tawny withering 3	9.360