Gene detail

Detail information of GWHGAAZE019950

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006484223.1	1.15226E-86	PREDICTED: ATP-dependent RNA helicase DHX8-like [Citrus sinensis]
COG	YP_005368855.1	1E-12	ATP-dependent helicase
Swissprot	tr\|Q38953\|DHX8_ARATH	4E-32	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|M0ZX07\|M0ZX07_SOLTU	1E-101	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400009841} (Fragment)
TAIR10	AT1G26370.1	2E-37	RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	70063775	70069319	-
GWHAAZE00000005	mRNA	70063775	70069319	-
GWHAAZE00000005	exon	70069302	70069319	-
GWHAAZE00000005	exon	70068610	70068813	-
GWHAAZE00000005	exon	70068170	70068228	-
GWHAAZE00000005	exon	70067227	70067391	-
GWHAAZE00000005	exon	70067048	70067116	-
GWHAAZE00000005	exon	70064181	70064315	-
GWHAAZE00000005	exon	70063775	70063958	-
GWHAAZE00000005	CDS	70069302	70069319	-
GWHAAZE00000005	CDS	70068610	70068813	-
GWHAAZE00000005	CDS	70068170	70068228	-
GWHAAZE00000005	CDS	70067227	70067391	-
GWHAAZE00000005	CDS	70067048	70067116	-
GWHAAZE00000005	CDS	70064181	70064315	-
GWHAAZE00000005	CDS	70063775	70063958	-

Transcript Sequence
>GWHTAAZE019972 ATGGCAGCAGCAAAACAGATACATTTGGAGGAGGGTCCTGGTGATATACTTGTATTCCTGACTGGCCAAGAAGAGATTGAAGCTGTTGAAAGGCTTGTTAATGAGCGTCTTCGAAAATTACCTCAAGGCAATCAGAAGCTGTTAGTCTTTCCTATATTCTCATCACTTCCCTCTGAAAAGCAGTTGAAAGTTTTCATTCCTGCTCCAGTTGGATTTCGTAAGCTCAAGGTTCTTGGCGTCGATGATATAATTGGGTTTGATTTCATGGAAAAACCAGATAGGATGGCTATCATCAAATCATTGGAGTCATTGTATTTGCTAGGTGCTCTCACAGAAGAAAGTACACTATCAGATCCAGTTGGGCATCAAATGGCCCGGCTACCAGTGGAGCCCATTAACGGGAAGGCTCTTATCCTTGCTAGTCAGTTCAATTGCTTGGAAAAAATTCGTAATTTCACATATCTAAGTGCCAGTGAGTTACATAAACATATGCTGACTGATGAAGCCAAATTCTGTCAAATAAAGGGGAATGTGGAACAAATGGGTCTTCGTGTTTCTTCATGCGGAGACGATATGCTACAGTTTCGTAGGTGCCTTGCTGCTTCCTTTTTCCTCAATGCAGCTTTGAAGCAGCCCGATGGTACTTACAGGGTTTTGGCAAGTGGTCAGACGGTGCAAATACACCCTTCTTCTGTGTTATTCAGGGCAAAACCAGAGTGCATAATTTTCGATGAATTAGTCCGGACTAATCAAAGTTACGTCCGCAACATTACTAGAATCGATTACTTGTGGTTACCTGAGCTGGCTCCGCAGTTCTATACATTGCATGATTAG

Network for GWHGAAZE019950

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04408.24	HA2	100	150	2.20E-09
PF07717.17	OB_NTP_bind	196	271	5.90E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12818	DHX8, PRP22	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0004386	molecular_function	helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.421
	SRR3591706	second leaf	0.237
	SRR3591707	mature leaf	0.533
	SRR3591708	Shoot apex	0.475
	SRR3591709	Stem	0.557
	SRR3591710	White floral bud	0.461
	SRR3591711	White flower	0.618
	SRR3591712	Green floral bud	0.466
	SRR3591713	Yellow flower	0.879
SRP173429	SRR8316895	Juvenile bud stage	0.110
	SRR8316896	Juvenile bud stage	0.212
	SRR8316897	Juvenile bud stage	0.079
	SRR8316894	Third green stage	0.106
	SRR8316900	Third green stage	0.227
	SRR8316901	Third green stage	0.181
	SRR8316898	Complete white stage	0.085
	SRR8316899	Complete white stage	0.779
	SRR8316903	Complete white stage	0.031
	SRR8316902	Silver flowering stage	0.048
	SRR8316904	Silver flowering stage	0.069
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.042
	SRR8316908	Gold flowering stage	0.148
SRP132670	SRR6706286	Control	0.034
	SRR6706287	Light intensity 50%	0.035
	SRR6706288	Light intensity 20%	0.008
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.292
	CNS0095593	Slightly white alabastrum(diploid) 2	0.205
	CNS0095594	Slightly white alabastrum(diploid) 3	0.174
	CNS0095595	Whole white alabastrum(diploid) 2	0.074
	CNS0095596	Whole white alabastrum(diploid) 3	0.161
	CNS0095597	Whole white alabastrum(diploid) 4	0.229
	CNS0095598	Silvery flower (diploied) 1	0.123
	CNS0095599	Silvery flower (diploied) 2	0.053
	CNS0095600	Silvery flower (diploied) 3	0.499
	CNS0095601	Golden flower (diploid) 1	0.019
	CNS0095602	Golden flower (diploid) 2	0.177
	CNS0095603	Golden flower (diploid) 3	0.206
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.264
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.123
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.336
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.032
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.027
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.195
	CNS0095610	Silvery flower (tetraploid) 1	0.491
	CNS0095611	Silvery flower (tetraploid) 2	0.292
	CNS0095612	Silvery flower (tetraploid) 3	0.328
	CNS0095613	Golden flower (tetraploid) 1	0.581
	CNS0095614	Golden flower (tetraploid) 2	0.226
	CNS0095615	Golden flower (tetraploid) 3	0.261
CRA001975	CRR073297	Stem 1	0.148
	CRR073298	Stem 2	0.178
	CRR073299	Stem 3	0.003
	CRR073300	Leaf 1	0.291
	CRR073301	Leaf 2	0.119
	CRR073302	Leaf 3	0.124
	CRR073303	Juvenile bud 1	0.416
	CRR073304	Juvenile bud 2	0.064
	CRR073305	Juvenile bud 3	0.154
	CRR073306	Third green 1	0.054
	CRR073307	Third green 2	0.023
	CRR073308	Third green 3	0.087
	CRR073309	Second white 1	0.058
	CRR073310	Second white 2	0.064
	CRR073311	Second white 3	0.305
	CRR073312	Silver flowering 1	0.024
	CRR073313	Silver flowering 2	0.290
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.015
	CRR073316	Gold flowering 2	0.096
	CRR073317	Gold flowering 3	0.025
	CRR073318	Tawny withering 1	0.096
	CRR073319	Tawny withering 2	0.290
	CRR073320	Tawny withering 3	0.161