Detail information of GWHGAAZE019923


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP23587.11.1773E-124hypothetical protein JCGZ_23420 [Jatropha curcas]
COGYP_004177782.14E-26shikimate 5-dehydrogenase
Swissprottr|Q9SQT8|DHQSD_ARATH1E-55Shikimate dehydrogenase (Precursor)
trEMBLtr|A0A067JI74|A0A067JI74_JATCU4E-125Uncharacterized protein {ECO:0000313|EMBL:KDP23587.1}
TAIR10AT3G06350.12E-25dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene6806784568072322-
GWHAAZE00000005mRNA6806784568072322-
GWHAAZE00000005exon6806784568068006-
GWHAAZE00000005exon6806808768068238-
GWHAAZE00000005exon6806909568069242-
GWHAAZE00000005exon6806959568069631-
GWHAAZE00000005exon6807017068070265-
GWHAAZE00000005exon6807035768070511-
GWHAAZE00000005exon6807154468071762-
GWHAAZE00000005exon6807217668072322-
GWHAAZE00000005CDS6807217668072322-
GWHAAZE00000005CDS6807154468071762-
GWHAAZE00000005CDS6807035768070511-
GWHAAZE00000005CDS6807017068070265-
GWHAAZE00000005CDS6806959568069631-
GWHAAZE00000005CDS6806909568069242-
GWHAAZE00000005CDS6806808768068238-
GWHAAZE00000005CDS6806784568068006-
Transcript Sequence

Network for GWHGAAZE019923

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01487.16DHquinase_I321712.90E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13832aroDE, DHQ-SDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0003855molecular_function3-dehydroquinate dehydratase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.279
SRR3591706second leaf9.101
SRR3591707mature leaf11.813
SRR3591708Shoot apex20.799
SRR3591709Stem25.228
SRR3591710White floral bud13.739
SRR3591711White flower16.189
SRR3591712Green floral bud18.485
SRR3591713Yellow flower9.586
SRP173429 SRR8316895Juvenile bud stage 15.199
SRR8316896Juvenile bud stage 19.124
SRR8316897Juvenile bud stage 12.642
SRR8316894Third green stage 9.083
SRR8316900Third green stage 18.626
SRR8316901Third green stage 20.744
SRR8316898Complete white stage 1.703
SRR8316899Complete white stage 14.349
SRR8316903Complete white stage 6.159
SRR8316902Silver flowering stage3.850
SRR8316904Silver flowering stage4.890
SRR8316905Silver flowering stage1.933
SRR8316906Gold flowering stage 5.402
SRR8316907Gold flowering stage 5.706
SRR8316908Gold flowering stage 8.548
SRP132670SRR6706286Control6.433
SRR6706287Light intensity 50%8.053
SRR6706288Light intensity 20%9.864
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.637
CNS0095593Slightly white alabastrum(diploid) 220.201
CNS0095594Slightly white alabastrum(diploid) 316.897
CNS0095595Whole white alabastrum(diploid) 211.864
CNS0095596Whole white alabastrum(diploid) 312.801
CNS0095597Whole white alabastrum(diploid) 412.869
CNS0095598Silvery flower (diploied) 116.283
CNS0095599Silvery flower (diploied) 215.959
CNS0095600Silvery flower (diploied) 36.739
CNS0095601Golden flower (diploid) 115.188
CNS0095602Golden flower (diploid) 27.798
CNS0095603Golden flower (diploid) 37.763
CNS0095604Slightly white alabastrum(tetraploid) 119.491
CNS0095605Slightly white alabastrum(tetraploid) 218.323
CNS0095606Slightly white alabastrum(tetraploid) 324.661
CNS0095607Whole white alabastrum(tetraploid) 112.840
CNS0095608Whole white alabastrum(tetraploid) 210.602
CNS0095609Whole white alabastrum(tetraploid) 316.669
CNS0095610Silvery flower (tetraploid) 112.996
CNS0095611Silvery flower (tetraploid) 210.794
CNS0095612Silvery flower (tetraploid) 39.497
CNS0095613Golden flower (tetraploid) 19.691
CNS0095614Golden flower (tetraploid) 212.359
CNS0095615Golden flower (tetraploid) 310.029
CRA001975CRR073297Stem 113.541
CRR073298Stem 213.535
CRR073299Stem 33.985
CRR073300Leaf 119.733
CRR073301Leaf 218.380
CRR073302Leaf 33.637
CRR073303Juvenile bud 14.763
CRR073304Juvenile bud 21.143
CRR073305Juvenile bud 33.586
CRR073306Third green 10.400
CRR073307Third green 20.238
CRR073308Third green 30.534
CRR073309Second white 10.069
CRR073310Second white 20.140
CRR073311Second white 30.353
CRR073312Silver flowering 10.845
CRR073313Silver flowering 20.757
CRR073314Silver flowering 30.627
CRR073315Gold flowering 12.709
CRR073316Gold flowering 23.365
CRR073317Gold flowering 30.215
CRR073318Tawny withering 17.190
CRR073319Tawny withering 212.000
CRR073320Tawny withering 36.201