Detail information of GWHGAAZE019740


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002270052.18.65548E-51PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Vitis vinifera]
trEMBLtr|F6GXH3|F6GXH3_VITVI3E-51Putative uncharacterized protein {ECO:0000313|EMBL:CCB44659.1}
TAIR10AT5G57370.11E-23Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene6010460360105058-
GWHAAZE00000005mRNA6010460360105058-
GWHAAZE00000005exon6010460360105058-
GWHAAZE00000005CDS6010460360105058-
Transcript Sequence

Network for GWHGAAZE019740

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08648.13SNRNP27931471.10E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12846SNRNP27 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0008380biological_processRNA splicing

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.930
SRR3591706second leaf24.422
SRR3591707mature leaf16.312
SRR3591708Shoot apex57.243
SRR3591709Stem38.715
SRR3591710White floral bud45.212
SRR3591711White flower37.440
SRR3591712Green floral bud38.890
SRR3591713Yellow flower30.580
SRP173429 SRR8316895Juvenile bud stage 39.405
SRR8316896Juvenile bud stage 50.863
SRR8316897Juvenile bud stage 21.471
SRR8316894Third green stage 17.201
SRR8316900Third green stage 50.269
SRR8316901Third green stage 51.420
SRR8316898Complete white stage 30.241
SRR8316899Complete white stage 75.281
SRR8316903Complete white stage 37.617
SRR8316902Silver flowering stage26.690
SRR8316904Silver flowering stage31.017
SRR8316905Silver flowering stage18.339
SRR8316906Gold flowering stage 48.222
SRR8316907Gold flowering stage 55.639
SRR8316908Gold flowering stage 53.234
SRP132670SRR6706286Control66.635
SRR6706287Light intensity 50%56.858
SRR6706288Light intensity 20%56.815
CNP0000432CNS0095592Slightly white alabastrum(diploid) 150.444
CNS0095593Slightly white alabastrum(diploid) 261.794
CNS0095594Slightly white alabastrum(diploid) 350.868
CNS0095595Whole white alabastrum(diploid) 249.840
CNS0095596Whole white alabastrum(diploid) 346.593
CNS0095597Whole white alabastrum(diploid) 449.440
CNS0095598Silvery flower (diploied) 139.016
CNS0095599Silvery flower (diploied) 249.361
CNS0095600Silvery flower (diploied) 346.751
CNS0095601Golden flower (diploid) 148.477
CNS0095602Golden flower (diploid) 246.966
CNS0095603Golden flower (diploid) 350.522
CNS0095604Slightly white alabastrum(tetraploid) 155.727
CNS0095605Slightly white alabastrum(tetraploid) 253.030
CNS0095606Slightly white alabastrum(tetraploid) 373.294
CNS0095607Whole white alabastrum(tetraploid) 158.842
CNS0095608Whole white alabastrum(tetraploid) 252.822
CNS0095609Whole white alabastrum(tetraploid) 359.865
CNS0095610Silvery flower (tetraploid) 155.279
CNS0095611Silvery flower (tetraploid) 240.792
CNS0095612Silvery flower (tetraploid) 347.158
CNS0095613Golden flower (tetraploid) 149.329
CNS0095614Golden flower (tetraploid) 258.030
CNS0095615Golden flower (tetraploid) 354.618
CRA001975CRR073297Stem 171.669
CRR073298Stem 259.021
CRR073299Stem 369.819
CRR073300Leaf 158.860
CRR073301Leaf 258.944
CRR073302Leaf 351.140
CRR073303Juvenile bud 152.759
CRR073304Juvenile bud 245.942
CRR073305Juvenile bud 345.009
CRR073306Third green 157.229
CRR073307Third green 251.841
CRR073308Third green 354.010
CRR073309Second white 139.972
CRR073310Second white 240.171
CRR073311Second white 330.962
CRR073312Silver flowering 133.702
CRR073313Silver flowering 241.331
CRR073314Silver flowering 330.322
CRR073315Gold flowering 143.083
CRR073316Gold flowering 234.789
CRR073317Gold flowering 335.205
CRR073318Tawny withering 161.489
CRR073319Tawny withering 263.626
CRR073320Tawny withering 362.649