Gene detail

Detail information of GWHGAAZE019722

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010070260.1	4.63317E-34	PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Eucalyptus grandis]
Swissprot	tr\|Q1PEY5\|HIBC2_ARATH	1E-30	Probable 3-hydroxyisobutyryl-CoA hydrolase 2
trEMBL	tr\|A0A059CYJ0\|A0A059CYJ0_EUCGR	7E-34	Uncharacterized protein {ECO:0000313\|EMBL:KCW83005.1}
TAIR10	AT2G30650.1	3E-26	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	59372731	59376163	-
GWHAAZE00000005	mRNA	59372731	59376163	-
GWHAAZE00000005	exon	59372731	59372856	-
GWHAAZE00000005	exon	59373519	59373580	-
GWHAAZE00000005	exon	59375407	59375617	-
GWHAAZE00000005	exon	59375878	59375963	-
GWHAAZE00000005	exon	59376088	59376163	-
GWHAAZE00000005	CDS	59376088	59376163	-
GWHAAZE00000005	CDS	59375878	59375963	-
GWHAAZE00000005	CDS	59375407	59375617	-
GWHAAZE00000005	CDS	59373519	59373580	-
GWHAAZE00000005	CDS	59372731	59372856	-

Transcript Sequence
>GWHTAAZE019744 ATGCCAGAAGTATCAATAGGACTACTTCCAGATGTTGGGGCCTCGCATTTTTTATCACGACTTCCCGGCTACCTTGGAGAATATCTAGGGTTGACGGGTGCGAGATTAGATGGGAAATCGATGTTAGCATGTGGTCTTGCAACTAATTTTATCCTTTCAAAGACGAGGAAGAAAGTTTTTCGGAAAATAAAAGACCAAAGAATAGCGCCGACGAAGGAGAACATCAGTTTCTTCCTAATCTCCTTGATTCCTTCACCTAACTTAGATTTCTTTCCCGAACCTCCGACGCCGACGAATGGCGCCGGTGAAGAAGAACGCTTGAGTCTCTCTCTACGATCACTCGATCCACGGTGCTTGTGGAACTCCAGCGACGATTGGAGATTATCAACAAATGCTTTTCCAGAAAAAACTGTTGAAGAAATATTATCATCACTGGAGGGAGTTATTGCAGATAGAGAAGACCATTGGATCCTTGACGCGATAAACTCGATGAAGATAGCTTCTCCGACAAGCCTAAAAGTGTTTTTACGTTCGGTAGGTCAACATCAATTTAGTGACTAA

Network for GWHGAAZE019722

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0176	GO:0020037 heme binding GOslim:molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GOslim:molecular_function GO:0005506 iron ion binding GOslim:molecular_function GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function GO:0004497 monooxygenase activity GOslim:molecular_function GO:0055114 oxidation-reduction process GOslim:biological_process

Module ID

Function Annotation

CFinderModule0176

GO:0020037 heme binding GOslim:molecular_function
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GOslim:molecular_function
GO:0005506 iron ion binding GOslim:molecular_function
GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function
GO:0004497 monooxygenase activity GOslim:molecular_function
GO:0055114 oxidation-reduction process GOslim:biological_process

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.6	ECH_2	1	69	1.70E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Valine, leucine and isoleucine degradation	map00280
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.005
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.007
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.001
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.098
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.101
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.068
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.005
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.057
	CRR073310	Second white 2	0.089
	CRR073311	Second white 3	1.011
	CRR073312	Silver flowering 1	0.040
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000