Detail information of GWHGAAZE019718


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010050119.13.52579E-44PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Eucalyptus grandis]
Swissprottr|Q6NMB0|HIBC3_ARATH7E-39Probable 3-hydroxyisobutyryl-CoA hydrolase 3
trEMBLtr|A0A061E297|A0A061E297_THECC2E-44Beta-hydroxyisobutyryl-CoA hydrolase 1 {ECO:0000313|EMBL:EOX99080.1}
TAIR10AT2G30660.18E-33ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5916747959169154-
GWHAAZE00000005mRNA5916747959169154-
GWHAAZE00000005exon5916747959167574-
GWHAAZE00000005exon5916861959168702-
GWHAAZE00000005exon5916906259169154-
GWHAAZE00000005CDS5916906259169154-
GWHAAZE00000005CDS5916861959168702-
GWHAAZE00000005CDS5916747959167574-
Transcript Sequence

Network for GWHGAAZE019718

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16113.6ECH_211906.10E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05605HIBCH Metabolic pathways map01100
Carbon metabolismmap01200
Propanoate metabolismmap00640
Valine, leucine and isoleucine degradationmap00280
beta-Alanine metabolismmap00410

Gene Ontology

GO term OntologyName
GO:0003860molecular_function3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.886
SRR3591711White flower6.989
SRR3591712Green floral bud0.000
SRR3591713Yellow flower10.567
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.163
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.062
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 2.123
SRR8316899Complete white stage 0.337
SRR8316903Complete white stage 2.127
SRR8316902Silver flowering stage213.863
SRR8316904Silver flowering stage329.845
SRR8316905Silver flowering stage204.582
SRR8316906Gold flowering stage 618.052
SRR8316907Gold flowering stage 566.776
SRR8316908Gold flowering stage 224.168
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.000
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.163
CNS0095593Slightly white alabastrum(diploid) 20.152
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.039
CNS0095596Whole white alabastrum(diploid) 30.031
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 115.036
CNS0095599Silvery flower (diploied) 225.766
CNS0095600Silvery flower (diploied) 399.961
CNS0095601Golden flower (diploid) 115.476
CNS0095602Golden flower (diploid) 242.754
CNS0095603Golden flower (diploid) 348.228
CNS0095604Slightly white alabastrum(tetraploid) 10.025
CNS0095605Slightly white alabastrum(tetraploid) 20.033
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.317
CNS0095611Silvery flower (tetraploid) 20.282
CNS0095612Silvery flower (tetraploid) 30.388
CNS0095613Golden flower (tetraploid) 10.305
CNS0095614Golden flower (tetraploid) 20.446
CNS0095615Golden flower (tetraploid) 30.110
CRA001975CRR073297Stem 10.034
CRR073298Stem 20.291
CRR073299Stem 30.082
CRR073300Leaf 10.044
CRR073301Leaf 20.248
CRR073302Leaf 30.249
CRR073303Juvenile bud 10.076
CRR073304Juvenile bud 20.363
CRR073305Juvenile bud 30.294
CRR073306Third green 1203.869
CRR073307Third green 2177.476
CRR073308Third green 3146.479
CRR073309Second white 1322.830
CRR073310Second white 2494.657
CRR073311Second white 3419.735
CRR073312Silver flowering 1271.882
CRR073313Silver flowering 2172.446
CRR073314Silver flowering 3222.579
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000