Gene detail

Detail information of GWHGAAZE019701

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037697.1	1.13515E-91	NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprot	tr\|Q8LKZ8\|RPS2_ARATH	6E-25	Disease resistance protein RPS2
trEMBL	tr\|A0A061G5B7\|A0A061G5B7_THECC	4E-92	NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313\|EMBL:EOY22199.1}
TAIR10	AT4G26090.1	4E-21	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	58370766	58374638	+
GWHAAZE00000005	mRNA	58370766	58374638	+
GWHAAZE00000005	exon	58370766	58370804	+
GWHAAZE00000005	exon	58370905	58371408	+
GWHAAZE00000005	exon	58371486	58372061	+
GWHAAZE00000005	exon	58372165	58372285	+
GWHAAZE00000005	exon	58372373	58374036	+
GWHAAZE00000005	exon	58374591	58374638	+
GWHAAZE00000005	CDS	58370766	58370804	+
GWHAAZE00000005	CDS	58370905	58371408	+
GWHAAZE00000005	CDS	58371486	58372061	+
GWHAAZE00000005	CDS	58372165	58372285	+
GWHAAZE00000005	CDS	58372373	58374036	+
GWHAAZE00000005	CDS	58374591	58374638	+

Transcript Sequence
>GWHTAAZE019723 ATGAAAGAAATAGTATGTTTGACCGGCCACAATCACGAAGTTCTTGGTGTTTTGATGGCTGAAGTTGAAGCAGCAGCAGGTATTATTTCCGGGGTGATGTCGTTAAAGCCAGTATTATGGGATCCAATCAGGGAAGTTTCAAGGGATATGGGGAAGATTCACGGTGATTTGACCAATGCAATGCACAAGTTGTTGGCCAAAAAGGAATGTCATGAGAAAATGTTAATGTTATGGAACTCTACAAAGAGACCATCTACAATCTACAATAACTGGATTCAAGAAGTGACGAAGTTGGAAAAAGATGTTGACGAAATAGATGCCAAATACGAAAGAAAAAGAAACAAGTCGAAGTTGTTACATTATTTTACATGTTCAAAGCTATGCGAGAAGATGAAAAATATGTTAGAAATGGCAGTTCGCTTGGAGGGCACACTAGTGGGAGACATTTTAGTAGGGAAAGAACCAGATCGTGTTGTGGAGATGAAAGGAGCACCGATATCAAAAAATTCCCCACACTTTCTGTACCACTGGAGAAGATATTGGAACTTGAACAACCATGAAAAAATTGCTGCCATGTTTGACCTAGTGATTTGGGTGAATGTTTCCATGGAGGAAAACAAGTGGAATTTCAGCCTTGAGCAAATGCAGCAAAGTATTGTGAAAAGACTAAACCTTGATGTCGAAAGTGCCAATGATGAAAAAGTTGCCGAAAGAATAAGGGGAGAGTTATGGGATAAGAAGTGTTTGTTACTTCTTGATGGGGTTAAGGAAGATTTCGAATTAACCCAAATTGGGATTGCTCTTAATTATGGAAATGGTAGCAAACTAGTGTTGACAACTAGGATGGGTCATGTTTATGACTCGATTGTGGACCAGGTGGTTAGAGTTGGAAGATTATCCAATGACGAAGCAAGAGATATGTTTAAAAAAATTCTGGGTCAATCGAAATGTAACTTTGGGCCGGGAATGTCAGGGGTAGTTAAATGCTGCGACAATCTTCCGTTTGTGATAAAAATGGTAGCAAGTGCCTTCAAAAACAAGAAAGCAGAGGAAAGCTGGGTCCAAGGATACAAAAATTTGACAAGATTTCCTAAAGAGGGCGATCTTGCCATTCAGAAAATTGGTTATTGGATTGTTGGGCGGCTGAAGATTTGTATGGCACTAACCAAGTACGTGACTTTGGCTGTCATATATTGGATGAACTTAAAAAGGTGTCTTTACTGGAGGAACATGTGTATGGTCAATCAGTACAAGATCCCCTTAAGCGTGGAAGACTGGAACCAAAAGAATCGAATCTCCTTGGTTGACAATAAACTGACAACCTTACCTGAACGCCCAGATTGTCCAATGCTTTCCACACTTATTTTAAAAAGAAATCAATGTTTGAATAAAATTCATAATCTTTTCTTTGAGAATACTGGAAATCTCCGAGTTTTGGACTTGTGTCATACGGGAATCGCGTCACTTCCATCTTCACTACGGAAGCTGAAACTTTTGAAAGTCCTATATCTAAATGATTGCACTTGCTTAGTGCAGCTTCCATCTGAAATTGGAGAACTTGAGAGTCTTCAAGTGCTCGATATAAGAGGCAGCGGGGTTGACAGTGTACCACTCCAAAACGAGGGTGTGCTAGGGACGATCCGCAGGCCTATTCAAAATTTGATATTCAGGAATCTCAAGCGGGGTCCATGTGCATCTCTAACCAACATAGAGAAATTGCACAATTTGAAGCGCTTGCTGGTTTCCTTCAATAATTTTGGCTATGAAAATGATGCATATATATCAGATTACTGCAATGTTATTTCCAAGGTTTCTACAACATTGGAAGAGTTGGTCATTGATGTGAAATCATACAAGCAACGTTGTGGTGAGATGATTAATATGGTGAGAGACAAGGTAGCAGCTACCATGACAAAGCTGACAACTCTCAAGTTTTGCTTTGAAGACGGTGTTGAAGATGTCATAAAAGTGGTGGCTGATACTCCACAAACCTATTATCCCCTAGCAGACGATCTTAAAAGTTTTGTTGAAAAAATAGATGACTCTGCATCCGAATCATTTCAACTTTTCATTGGTTGTTCAATCTCATTGCATCCTCAAATTCCCAAGCGTGACCAATATGGAAGGTATTTGAAATATTGCAATGGGAGAGGCTGTAACCCTACTACTATTGGTGAAGTACTCGCTATAACTGATGCATTTGAATTGGTTAACCACAATGACCTTGAGCATGTATCTGAGTTCGGAATAGAAAGCTTGTATGGGGTCCAAGGTTGTCTAATTGAAGCATGTAATAGTATTACCGAAATCGTTGATGGTAATTGTACCAAGGATGGTCCACTGCTTCCGAACCTACTGCGTTTATACATAAAGAAGTTGCCGAAATTGGGAAGCATTTGGAAAGGTCCCGTGCACCTCTGGAGCTTATCAAAACTGAGGACTTTGCTGATTGATGATTGCTCTAGCATAGAAGAGTTACTTATTGAACCTGCAAGTGTTGCCGTCCTACCAAAGCTGAGGAAGCTAGTACTTCTTAATTTGCCAAATTTGACAAGGATTTGCAAAAATGTGTCCCCAAAGTGGCCCACCTTAGAGAAGCTTAAGATACAAAACTGCCCCAGATTAACAGTGTTCCCTTTCTGCAAAGATAACACAGAGAAGCTGAGGAAGCTAACACTTCAGGGTATGCCGAATTTAGAAATGATTTGTGCATCCGAGTCATTTGAATGGCCTGCCTTGGAGAAGCTCAAGATATATGGTTGTTGCAGTTTAACAAAGTTACCTTTCAACAAAGATAACGCAAAGAATTTGAGTTCCCTTGAAGCAGAGGAAAAATGGTGGGAGGCATTGCTATGGCAAGACTGCACAGTGAAAGCGCGGCTCCAGCCTTACTGCTCCCTACAGCCGATTGACCAAGATGCAGCCACCAACGCTTCAAACGGTGGCCCTTAA

Network for GWHGAAZE019701

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00931.23	NB-ARC	184	364	3.00E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13459	RPS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.488
	SRR3591706	second leaf	0.170
	SRR3591707	mature leaf	0.070
	SRR3591708	Shoot apex	0.310
	SRR3591709	Stem	0.358
	SRR3591710	White floral bud	0.246
	SRR3591711	White flower	0.190
	SRR3591712	Green floral bud	0.209
	SRR3591713	Yellow flower	0.062
SRP173429	SRR8316895	Juvenile bud stage	0.013
	SRR8316896	Juvenile bud stage	0.051
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.003
	SRR8316900	Third green stage	0.010
	SRR8316901	Third green stage	0.006
	SRR8316898	Complete white stage	0.002
	SRR8316899	Complete white stage	0.023
	SRR8316903	Complete white stage	0.009
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.004
	SRR8316905	Silver flowering stage	0.021
	SRR8316906	Gold flowering stage	0.015
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.037
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.055
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.038
	CNS0095596	Whole white alabastrum(diploid) 3	0.007
	CNS0095597	Whole white alabastrum(diploid) 4	0.026
	CNS0095598	Silvery flower (diploied) 1	0.030
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.020
	CNS0095601	Golden flower (diploid) 1	0.009
	CNS0095602	Golden flower (diploid) 2	0.005
	CNS0095603	Golden flower (diploid) 3	0.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.004
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.032
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.008
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.020
	CNS0095610	Silvery flower (tetraploid) 1	0.037
	CNS0095611	Silvery flower (tetraploid) 2	0.002
	CNS0095612	Silvery flower (tetraploid) 3	0.022
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.029
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.003
	CRR073298	Stem 2	0.003
	CRR073299	Stem 3	0.027
	CRR073300	Leaf 1	0.068
	CRR073301	Leaf 2	0.062
	CRR073302	Leaf 3	0.058
	CRR073303	Juvenile bud 1	0.007
	CRR073304	Juvenile bud 2	0.049
	CRR073305	Juvenile bud 3	0.013
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.003
	CRR073309	Second white 1	0.038
	CRR073310	Second white 2	0.017
	CRR073311	Second white 3	0.016
	CRR073312	Silver flowering 1	0.019
	CRR073313	Silver flowering 2	0.011
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.067
	CRR073316	Gold flowering 2	0.074
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.046
	CRR073319	Tawny withering 2	0.025
	CRR073320	Tawny withering 3	0.117