Detail information of GWHGAAZE019651


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006375768.15.24447E-52hypothetical protein POPTR_0013s025002g, partial [Populus trichocarpa]
Swissprottr|Q9FR37|AMI1_ARATH7E-40Amidase 1
trEMBLtr|U5FRE0|U5FRE0_POPTR2E-52Uncharacterized protein {ECO:0000313|EMBL:ERP53565.1} (Fragment)
TAIR10AT1G08980.12E-34amidase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5659045556595614-
GWHAAZE00000005mRNA5659045556595614-
GWHAAZE00000005exon5659545656595614-
GWHAAZE00000005exon5659213956592222-
GWHAAZE00000005exon5659147456591608-
GWHAAZE00000005exon5659045556590598-
GWHAAZE00000005CDS5659545656595614-
GWHAAZE00000005CDS5659213956592222-
GWHAAZE00000005CDS5659147456591608-
GWHAAZE00000005CDS5659045556590598-
Transcript Sequence

Network for GWHGAAZE019651

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01426E3.5.1.4, amiE Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Arginine and proline metabolismmap00330
Phenylalanine metabolismmap00360
Tryptophan metabolismmap00380
Aminobenzoate degradationmap00627
Styrene degradationmap00643

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.874
SRR3591706second leaf0.328
SRR3591707mature leaf0.807
SRR3591708Shoot apex1.000
SRR3591709Stem1.929
SRR3591710White floral bud0.279
SRR3591711White flower0.293
SRR3591712Green floral bud0.109
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.372
SRR8316896Juvenile bud stage 0.576
SRR8316897Juvenile bud stage 0.132
SRR8316894Third green stage 0.114
SRR8316900Third green stage 0.294
SRR8316901Third green stage 0.257
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.123
SRR8316903Complete white stage 0.040
SRR8316902Silver flowering stage0.033
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.112
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.042
SRR6706287Light intensity 50%0.077
SRR6706288Light intensity 20%0.085
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.613
CNS0095593Slightly white alabastrum(diploid) 20.069
CNS0095594Slightly white alabastrum(diploid) 30.798
CNS0095595Whole white alabastrum(diploid) 20.274
CNS0095596Whole white alabastrum(diploid) 30.469
CNS0095597Whole white alabastrum(diploid) 40.190
CNS0095598Silvery flower (diploied) 10.718
CNS0095599Silvery flower (diploied) 20.069
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.196
CNS0095602Golden flower (diploid) 20.108
CNS0095603Golden flower (diploid) 30.285
CNS0095604Slightly white alabastrum(tetraploid) 10.096
CNS0095605Slightly white alabastrum(tetraploid) 20.097
CNS0095606Slightly white alabastrum(tetraploid) 30.153
CNS0095607Whole white alabastrum(tetraploid) 10.161
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.025
CNS0095610Silvery flower (tetraploid) 10.167
CNS0095611Silvery flower (tetraploid) 20.130
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.021
CNS0095614Golden flower (tetraploid) 20.039
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.340
CRR073298Stem 20.119
CRR073299Stem 30.181
CRR073300Leaf 10.271
CRR073301Leaf 20.302
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.013
CRR073304Juvenile bud 20.076
CRR073305Juvenile bud 30.024
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.005
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.173
CRR073316Gold flowering 20.192
CRR073317Gold flowering 30.007
CRR073318Tawny withering 10.024
CRR073319Tawny withering 20.178
CRR073320Tawny withering 30.545