Detail information of GWHGAAZE019629


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGZ15315.11.55572E-45mevalonate kinase [Platycodon grandiflorus]
Swissprottr|P46086|KIME_ARATH6E-32Mevalonate kinase
trEMBLtr|V9PEX2|V9PEX2_9ASTR6E-46Mevalonate kinase {ECO:0000313|EMBL:AGZ15315.1}
TAIR10AT5G27450.33E-19mevalonate kinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5572388555726149-
GWHAAZE00000005mRNA5572388555726149-
GWHAAZE00000005exon5572388555724180-
GWHAAZE00000005exon5572508855725125-
GWHAAZE00000005exon5572601955726149-
GWHAAZE00000005CDS5572601955726149-
GWHAAZE00000005CDS5572508855725125-
GWHAAZE00000005CDS5572388555724180-
Transcript Sequence

Network for GWHGAAZE019629

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0110Transcription factor BSD family Transcription factor BSD
map00900 Terpenoid backbone biosynthesis
map04146 Peroxisome
map03022 Basal transcription factors
map03420 Nucleotide excision repair


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00869E2.7.1.36, MVK, mvaK1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900
Peroxisomemap04146

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.270
SRR3591706second leaf0.150
SRR3591707mature leaf0.150
SRR3591708Shoot apex0.219
SRR3591709Stem0.051
SRR3591710White floral bud0.095
SRR3591711White flower0.263
SRR3591712Green floral bud0.831
SRR3591713Yellow flower0.312
SRP173429 SRR8316895Juvenile bud stage 1.570
SRR8316896Juvenile bud stage 3.754
SRR8316897Juvenile bud stage 1.752
SRR8316894Third green stage 1.384
SRR8316900Third green stage 2.965
SRR8316901Third green stage 2.242
SRR8316898Complete white stage 0.818
SRR8316899Complete white stage 2.249
SRR8316903Complete white stage 0.855
SRR8316902Silver flowering stage0.291
SRR8316904Silver flowering stage0.311
SRR8316905Silver flowering stage0.138
SRR8316906Gold flowering stage 0.476
SRR8316907Gold flowering stage 0.538
SRR8316908Gold flowering stage 1.331
SRP132670SRR6706286Control1.722
SRR6706287Light intensity 50%2.333
SRR6706288Light intensity 20%3.059
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.342
CNS0095593Slightly white alabastrum(diploid) 21.998
CNS0095594Slightly white alabastrum(diploid) 32.566
CNS0095595Whole white alabastrum(diploid) 21.597
CNS0095596Whole white alabastrum(diploid) 31.194
CNS0095597Whole white alabastrum(diploid) 41.441
CNS0095598Silvery flower (diploied) 11.252
CNS0095599Silvery flower (diploied) 20.927
CNS0095600Silvery flower (diploied) 31.051
CNS0095601Golden flower (diploid) 10.504
CNS0095602Golden flower (diploid) 20.676
CNS0095603Golden flower (diploid) 30.511
CNS0095604Slightly white alabastrum(tetraploid) 10.701
CNS0095605Slightly white alabastrum(tetraploid) 20.218
CNS0095606Slightly white alabastrum(tetraploid) 30.150
CNS0095607Whole white alabastrum(tetraploid) 10.442
CNS0095608Whole white alabastrum(tetraploid) 21.270
CNS0095609Whole white alabastrum(tetraploid) 30.181
CNS0095610Silvery flower (tetraploid) 10.005
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.036
CNS0095613Golden flower (tetraploid) 10.074
CNS0095614Golden flower (tetraploid) 20.126
CNS0095615Golden flower (tetraploid) 30.022
CRA001975CRR073297Stem 12.658
CRR073298Stem 22.626
CRR073299Stem 32.315
CRR073300Leaf 12.598
CRR073301Leaf 23.543
CRR073302Leaf 30.947
CRR073303Juvenile bud 10.685
CRR073304Juvenile bud 20.531
CRR073305Juvenile bud 31.415
CRR073306Third green 10.465
CRR073307Third green 20.241
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.104
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.008
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.547
CRR073316Gold flowering 22.313
CRR073317Gold flowering 30.902
CRR073318Tawny withering 10.641
CRR073319Tawny withering 20.983
CRR073320Tawny withering 32.249