Gene detail

Detail information of GWHGAAZE019620

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN77023.1	5.4498E-149	hypothetical protein VITISV_015334 [Vitis vinifera]
Swissprot	tr\|F4KCL7\|OE64M_ARATH	1E-80	Outer envelope protein 64, mitochondrial
trEMBL	tr\|A5BL97\|A5BL97_VITVI	2E-149	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN77023.1}
TAIR10	AT1G08980.1	6E-66	amidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	55258110	55264099	-
GWHAAZE00000005	mRNA	55258110	55264099	-
GWHAAZE00000005	exon	55258110	55258262	-
GWHAAZE00000005	exon	55258873	55259007	-
GWHAAZE00000005	exon	55259916	55260084	-
GWHAAZE00000005	exon	55260255	55260402	-
GWHAAZE00000005	exon	55261949	55262074	-
GWHAAZE00000005	exon	55262164	55262288	-
GWHAAZE00000005	exon	55264062	55264099	-
GWHAAZE00000005	CDS	55264062	55264099	-
GWHAAZE00000005	CDS	55262164	55262288	-
GWHAAZE00000005	CDS	55261949	55262074	-
GWHAAZE00000005	CDS	55260255	55260402	-
GWHAAZE00000005	CDS	55259916	55260084	-
GWHAAZE00000005	CDS	55258873	55259007	-
GWHAAZE00000005	CDS	55258110	55258262	-

Transcript Sequence
>GWHTAAZE019642 ATGGGATACTTGAAAGAAATCACCATCACATTACGGAATATAAATGGAGAAAATGTACATTATGGAACACCCACCAATCCACATGCGCCAGATCGGGTACCTGGAGGATCTTCTAGTGGATCTGCCGTTTCAGTTGGTGCAACACTTGTAGATTTTTCCTTGGGTACGGATACTGGAGGAAGTGTAAGAGTTCCGGCATCATATTGTGGGATTTTGGGGTTTCGTCCTTCTCATGGACTTATTCCGACTACTGGAGTTATACCTATGGCACAGAGTTTTGATACTGTGGGTCATATTGTAAATTATGCAAGCATTGGGGATTATGTGGAGAGCAACGTTCCAAGTTTGAAGCGTTTCATGGTTAAAGGGGTAGAAAGCCAAGAATACAGTATTGAATCTTTGACTGCTCTTTCAAGTGCCATGCGGTCGCTTCAAAGGTATGAATTCAAGAATAACCACGGTGAATGGGTCAGTACTGTGAAACCTGATTTGGGTCCGGGAATATCAGAACGGGTATGGGAAGCTCTTCGGTCAACAGATGAAAACATTGATGCATGCCACTCTGTAAAGAATGAATTACGTTCTGCTCTTACTGCTCTCCTTGGGGATTATGGCATCCTTGTGATACCCTCGGTTCCTGGGCCTCCACCAAAACTGAAAACAGAGCCATCTACACTGGAAACATTCCGTGCCAGGGCTTTTAGCTTGTTGTCCATTGCCGGGGTATCTGGATTTTGCCAGGTGAGCATACCGCTAGGGATGTACGATAATCTACCTGTATCAGTTTCTTTGTTAGCAAAGCACGGTTCAGATGGGTTCCTACTGAATGTTGTTGAGACCATTTACGGAACCTTAAAAGAGCACATTGAAAGTGCTGAAAATCTAAGCTACTGA

Network for GWHGAAZE019620

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01425.22	Amidase	14	102	1.80E-33
PF01425.22	Amidase	183	275	1.10E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01426	E3.5.1.4, amiE	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Arginine and proline metabolism	map00330
		Phenylalanine metabolism	map00360
		Tryptophan metabolism	map00380
		Aminobenzoate degradation	map00627
		Styrene degradation	map00643

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.784
	SRR3591706	second leaf	7.380
	SRR3591707	mature leaf	5.145
	SRR3591708	Shoot apex	6.911
	SRR3591709	Stem	3.682
	SRR3591710	White floral bud	1.780
	SRR3591711	White flower	1.896
	SRR3591712	Green floral bud	1.619
	SRR3591713	Yellow flower	1.535
SRP173429	SRR8316895	Juvenile bud stage	5.515
	SRR8316896	Juvenile bud stage	5.875
	SRR8316897	Juvenile bud stage	3.532
	SRR8316894	Third green stage	2.201
	SRR8316900	Third green stage	6.719
	SRR8316901	Third green stage	7.007
	SRR8316898	Complete white stage	2.069
	SRR8316899	Complete white stage	6.619
	SRR8316903	Complete white stage	3.143
	SRR8316902	Silver flowering stage	1.967
	SRR8316904	Silver flowering stage	1.766
	SRR8316905	Silver flowering stage	1.546
	SRR8316906	Gold flowering stage	3.464
	SRR8316907	Gold flowering stage	4.421
	SRR8316908	Gold flowering stage	2.086
SRP132670	SRR6706286	Control	3.754
	SRR6706287	Light intensity 50%	3.619
	SRR6706288	Light intensity 20%	4.008
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.809
	CNS0095593	Slightly white alabastrum(diploid) 2	4.688
	CNS0095594	Slightly white alabastrum(diploid) 3	3.745
	CNS0095595	Whole white alabastrum(diploid) 2	3.925
	CNS0095596	Whole white alabastrum(diploid) 3	5.736
	CNS0095597	Whole white alabastrum(diploid) 4	3.426
	CNS0095598	Silvery flower (diploied) 1	6.631
	CNS0095599	Silvery flower (diploied) 2	8.071
	CNS0095600	Silvery flower (diploied) 3	4.496
	CNS0095601	Golden flower (diploid) 1	5.413
	CNS0095602	Golden flower (diploid) 2	5.068
	CNS0095603	Golden flower (diploid) 3	4.715
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.676
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.812
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.567
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.519
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.996
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.980
	CNS0095610	Silvery flower (tetraploid) 1	5.574
	CNS0095611	Silvery flower (tetraploid) 2	6.256
	CNS0095612	Silvery flower (tetraploid) 3	6.988
	CNS0095613	Golden flower (tetraploid) 1	4.844
	CNS0095614	Golden flower (tetraploid) 2	6.299
	CNS0095615	Golden flower (tetraploid) 3	3.969
CRA001975	CRR073297	Stem 1	6.104
	CRR073298	Stem 2	7.406
	CRR073299	Stem 3	8.325
	CRR073300	Leaf 1	4.777
	CRR073301	Leaf 2	5.326
	CRR073302	Leaf 3	7.575
	CRR073303	Juvenile bud 1	6.233
	CRR073304	Juvenile bud 2	3.390
	CRR073305	Juvenile bud 3	5.542
	CRR073306	Third green 1	2.147
	CRR073307	Third green 2	2.135
	CRR073308	Third green 3	1.138
	CRR073309	Second white 1	1.615
	CRR073310	Second white 2	3.232
	CRR073311	Second white 3	0.599
	CRR073312	Silver flowering 1	1.363
	CRR073313	Silver flowering 2	1.648
	CRR073314	Silver flowering 3	0.393
	CRR073315	Gold flowering 1	10.587
	CRR073316	Gold flowering 2	12.314
	CRR073317	Gold flowering 3	6.453
	CRR073318	Tawny withering 1	4.960
	CRR073319	Tawny withering 2	3.756
	CRR073320	Tawny withering 3	4.844