Detail information of GWHGAAZE019599


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284757.10PREDICTED: mitochondrial Rho GTPase 1 [Vitis vinifera]
Swissprottr|Q9SSX0|RAC1_ORYSJ1E-15Rac-like GTP-binding protein 1
trEMBLtr|D7U1Z9|D7U1Z9_VITVI0Mitochondrial Rho GTPase {ECO:0000256|PIRNR:PIRNR037488}
TAIR10AT5G27540.20MIRO-related GTP-ase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5364554953654104-
GWHAAZE00000005mRNA5364554953654104-
GWHAAZE00000005exon5364554953645657-
GWHAAZE00000005exon5364578853645999-
GWHAAZE00000005exon5364705053647131-
GWHAAZE00000005exon5364752453647579-
GWHAAZE00000005exon5364784853647916-
GWHAAZE00000005exon5364962353649874-
GWHAAZE00000005exon5365002653650202-
GWHAAZE00000005exon5365093053651079-
GWHAAZE00000005exon5365184453651976-
GWHAAZE00000005exon5365389353654104-
GWHAAZE00000005CDS5365389353654104-
GWHAAZE00000005CDS5365184453651976-
GWHAAZE00000005CDS5365093053651079-
GWHAAZE00000005CDS5365002653650202-
GWHAAZE00000005CDS5364962353649874-
GWHAAZE00000005CDS5364784853647916-
GWHAAZE00000005CDS5364752453647579-
GWHAAZE00000005CDS5364705053647131-
GWHAAZE00000005CDS5364578853645999-
GWHAAZE00000005CDS5364554953645657-
Transcript Sequence

Network for GWHGAAZE019599

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras161771.30E-12
PF08356.13EF_assoc_22313154.50E-30
PF08355.13EF_assoc_13524208.00E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07870RHOT1, ARHT1 Mitophagy - animal map04137
Apoptosis - flymap04214

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
GO:0005509molecular_functioncalcium ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.348
SRR3591706second leaf3.372
SRR3591707mature leaf2.021
SRR3591708Shoot apex6.085
SRR3591709Stem5.140
SRR3591710White floral bud6.121
SRR3591711White flower5.948
SRR3591712Green floral bud10.779
SRR3591713Yellow flower5.961
SRP173429 SRR8316895Juvenile bud stage 9.705
SRR8316896Juvenile bud stage 17.209
SRR8316897Juvenile bud stage 8.518
SRR8316894Third green stage 6.538
SRR8316900Third green stage 17.142
SRR8316901Third green stage 17.345
SRR8316898Complete white stage 4.805
SRR8316899Complete white stage 15.186
SRR8316903Complete white stage 5.935
SRR8316902Silver flowering stage3.221
SRR8316904Silver flowering stage4.418
SRR8316905Silver flowering stage1.811
SRR8316906Gold flowering stage 10.928
SRR8316907Gold flowering stage 9.730
SRR8316908Gold flowering stage 21.930
SRP132670SRR6706286Control8.464
SRR6706287Light intensity 50%10.159
SRR6706288Light intensity 20%11.119
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.274
CNS0095593Slightly white alabastrum(diploid) 28.446
CNS0095594Slightly white alabastrum(diploid) 38.970
CNS0095595Whole white alabastrum(diploid) 27.484
CNS0095596Whole white alabastrum(diploid) 310.890
CNS0095597Whole white alabastrum(diploid) 48.748
CNS0095598Silvery flower (diploied) 17.636
CNS0095599Silvery flower (diploied) 29.337
CNS0095600Silvery flower (diploied) 38.198
CNS0095601Golden flower (diploid) 16.233
CNS0095602Golden flower (diploid) 28.415
CNS0095603Golden flower (diploid) 38.336
CNS0095604Slightly white alabastrum(tetraploid) 114.067
CNS0095605Slightly white alabastrum(tetraploid) 211.717
CNS0095606Slightly white alabastrum(tetraploid) 314.490
CNS0095607Whole white alabastrum(tetraploid) 19.947
CNS0095608Whole white alabastrum(tetraploid) 210.240
CNS0095609Whole white alabastrum(tetraploid) 319.984
CNS0095610Silvery flower (tetraploid) 111.821
CNS0095611Silvery flower (tetraploid) 212.388
CNS0095612Silvery flower (tetraploid) 349.759
CNS0095613Golden flower (tetraploid) 15.514
CNS0095614Golden flower (tetraploid) 29.476
CNS0095615Golden flower (tetraploid) 314.845
CRA001975CRR073297Stem 114.594
CRR073298Stem 213.914
CRR073299Stem 311.717
CRR073300Leaf 114.687
CRR073301Leaf 212.535
CRR073302Leaf 313.832
CRR073303Juvenile bud 111.216
CRR073304Juvenile bud 211.483
CRR073305Juvenile bud 312.331
CRR073306Third green 15.721
CRR073307Third green 23.520
CRR073308Third green 35.181
CRR073309Second white 15.765
CRR073310Second white 28.944
CRR073311Second white 311.308
CRR073312Silver flowering 111.763
CRR073313Silver flowering 27.269
CRR073314Silver flowering 39.117
CRR073315Gold flowering 15.143
CRR073316Gold flowering 210.292
CRR073317Gold flowering 36.434
CRR073318Tawny withering 19.991
CRR073319Tawny withering 25.509
CRR073320Tawny withering 37.558