Detail information of GWHGAAZE019598


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008454749.11.61736E-66PREDICTED: mitochondrial Rho GTPase 1-like [Cucumis melo]
trEMBLtr|A6YTD0|A6YTD0_CUCME6E-67Mitochondrial Rho GTPase {ECO:0000256|PIRNR:PIRNR037488}
TAIR10AT5G27540.25E-53MIRO-related GTP-ase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5363719253639820-
GWHAAZE00000005mRNA5363719253639820-
GWHAAZE00000005exon5363975253639820-
GWHAAZE00000005exon5363902053639132-
GWHAAZE00000005exon5363763453637727-
GWHAAZE00000005exon5363719253637377-
GWHAAZE00000005CDS5363975253639820-
GWHAAZE00000005CDS5363902053639132-
GWHAAZE00000005CDS5363763453637727-
GWHAAZE00000005CDS5363719253637377-
Transcript Sequence

Network for GWHGAAZE019598

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07870RHOT1, ARHT1 Mitophagy - animal map04137
Apoptosis - flymap04214

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.192
SRR3591706second leaf2.853
SRR3591707mature leaf3.037
SRR3591708Shoot apex5.652
SRR3591709Stem6.578
SRR3591710White floral bud5.176
SRR3591711White flower6.735
SRR3591712Green floral bud9.478
SRR3591713Yellow flower6.457
SRP173429 SRR8316895Juvenile bud stage 11.364
SRR8316896Juvenile bud stage 19.218
SRR8316897Juvenile bud stage 8.525
SRR8316894Third green stage 8.174
SRR8316900Third green stage 18.362
SRR8316901Third green stage 19.183
SRR8316898Complete white stage 2.687
SRR8316899Complete white stage 12.628
SRR8316903Complete white stage 6.099
SRR8316902Silver flowering stage2.891
SRR8316904Silver flowering stage2.978
SRR8316905Silver flowering stage2.513
SRR8316906Gold flowering stage 10.957
SRR8316907Gold flowering stage 9.106
SRR8316908Gold flowering stage 21.854
SRP132670SRR6706286Control6.451
SRR6706287Light intensity 50%8.071
SRR6706288Light intensity 20%8.665
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.791
CNS0095593Slightly white alabastrum(diploid) 219.832
CNS0095594Slightly white alabastrum(diploid) 326.721
CNS0095595Whole white alabastrum(diploid) 218.671
CNS0095596Whole white alabastrum(diploid) 321.486
CNS0095597Whole white alabastrum(diploid) 418.216
CNS0095598Silvery flower (diploied) 16.783
CNS0095599Silvery flower (diploied) 28.453
CNS0095600Silvery flower (diploied) 37.578
CNS0095601Golden flower (diploid) 110.936
CNS0095602Golden flower (diploid) 26.460
CNS0095603Golden flower (diploid) 36.257
CNS0095604Slightly white alabastrum(tetraploid) 120.082
CNS0095605Slightly white alabastrum(tetraploid) 221.773
CNS0095606Slightly white alabastrum(tetraploid) 313.377
CNS0095607Whole white alabastrum(tetraploid) 123.196
CNS0095608Whole white alabastrum(tetraploid) 223.096
CNS0095609Whole white alabastrum(tetraploid) 315.584
CNS0095610Silvery flower (tetraploid) 110.945
CNS0095611Silvery flower (tetraploid) 211.613
CNS0095612Silvery flower (tetraploid) 354.042
CNS0095613Golden flower (tetraploid) 111.248
CNS0095614Golden flower (tetraploid) 29.000
CNS0095615Golden flower (tetraploid) 313.013
CRA001975CRR073297Stem 115.470
CRR073298Stem 211.455
CRR073299Stem 311.511
CRR073300Leaf 116.569
CRR073301Leaf 213.753
CRR073302Leaf 315.303
CRR073303Juvenile bud 114.169
CRR073304Juvenile bud 210.649
CRR073305Juvenile bud 312.822
CRR073306Third green 13.918
CRR073307Third green 24.738
CRR073308Third green 34.357
CRR073309Second white 16.068
CRR073310Second white 28.319
CRR073311Second white 310.786
CRR073312Silver flowering 110.151
CRR073313Silver flowering 27.079
CRR073314Silver flowering 310.991
CRR073315Gold flowering 16.325
CRR073316Gold flowering 24.810
CRR073317Gold flowering 32.774
CRR073318Tawny withering 111.143
CRR073319Tawny withering 211.185
CRR073320Tawny withering 38.415