Gene detail

Detail information of GWHGAAZE019591

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02819.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068U3S6\|A0A068U3S6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02819.1}
TAIR10	AT5G49530.1	2E-128	SIN-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	53329465	53342829	+
GWHAAZE00000005	mRNA	53329465	53342829	+
GWHAAZE00000005	exon	53329465	53329755	+
GWHAAZE00000005	exon	53330414	53330482	+
GWHAAZE00000005	exon	53332039	53332146	+
GWHAAZE00000005	exon	53333350	53333418	+
GWHAAZE00000005	exon	53334171	53334281	+
GWHAAZE00000005	exon	53334476	53334520	+
GWHAAZE00000005	exon	53335872	53335978	+
GWHAAZE00000005	exon	53336101	53336172	+
GWHAAZE00000005	exon	53339846	53339897	+
GWHAAZE00000005	exon	53340415	53341022	+
GWHAAZE00000005	exon	53341718	53341939	+
GWHAAZE00000005	exon	53342013	53342130	+
GWHAAZE00000005	exon	53342758	53342829	+
GWHAAZE00000005	CDS	53329465	53329755	+
GWHAAZE00000005	CDS	53330414	53330482	+
GWHAAZE00000005	CDS	53332039	53332146	+
GWHAAZE00000005	CDS	53333350	53333418	+
GWHAAZE00000005	CDS	53334171	53334281	+
GWHAAZE00000005	CDS	53334476	53334520	+
GWHAAZE00000005	CDS	53335872	53335978	+
GWHAAZE00000005	CDS	53336101	53336172	+
GWHAAZE00000005	CDS	53339846	53339897	+
GWHAAZE00000005	CDS	53340415	53341022	+
GWHAAZE00000005	CDS	53341718	53341939	+
GWHAAZE00000005	CDS	53342013	53342130	+
GWHAAZE00000005	CDS	53342758	53342829	+

Transcript Sequence
>GWHTAAZE019613 CCATTAGCATCCGAACCACCACCACCGCTACCTCAAGAACTTGATTCCACTCCTTCCATTGGAAAGGAGGAATTGGATGCGAAACCACCTCTAGTTGATTCCATCACCACCAAGACTGAATATGAACCTTCACATATCTCTGCGGTGGCGAATAGCACAGTGAAAATGGACATTGAAGAGACACTAGAAACAGAAGAACCAAAAGATCTTATGGAGGAAGACAAAAATGAAGATCAAGTTGTGCGAGAAATTGATGTGTACTTCAGCCCTCCTGTCGATCCTAACACTGAGCTATATGTTCTGCAATATCCACTACGTCCGTGTTGGCGACCGTATGAGATAGACGAGCGATGTGAAGAGGTCAGAGTGAAATCCCAGAGTTCTGAGGTTGAGATGGATTTGTCCGTTGATGTTGATTCTAAAAATTATGACACCGATGCTAGTGACAAATTAAAAATGACAAAACAGGTTTTGTCAACTGTGTGGAAGCCCCGTCGCACAACTGGCTATGTTGTTGGGGTTCTTGTGGACAATAAGTTGCACCTAAATCCTATTCATTCAGTTGTGCAACTCCGACCATCAATGCAACATCTTAATAAACCGGGAAACTCAAAAAAGAAGAATAGTGCAGTTAGCCAAGTTGAGATGAACAAGCCGGGCCCTTCGAATCAGCAAAACAAGGATATTGAAGAGCCTTGGATTCCACTCAAATATCATGATTCTAAGAGTGAGATCTCAACCAGATATCGGCGGAAAATGGTGGCTCAAACTGACTATCAAATACCATTTTCAATGACCTCGTATGAATATCTTAGTTCTTTGTGTCCTACCACATCAAATCACGACACGAGATCAAAAGGTCCTTCTAGAAGGATTTTGCTTTCATTGCCACTGGAAGATCGATATAGGACTTGGCTTCTTGAGGGCCCGCCAATCCATCGATTCAATGCACTTAAGCACCTAGCTCCTAATGATTCTGATGAAGATGTTCTACTAGTCCTCAAAGACCTTGCTCACGTAATTCAAGGATTATGGGTTCCACAAAGTCGTTTACTTTATCGAGATGATCAAGGAAGTGTGAAGTTAGCTAGAGATTACATTCTTCTTTTGTTTAGCAAGAACCCTATTATCAGTTCTGCCCAATTACCTCAAAAGCCTGAACTTCTTAAACATATGAAAGAAGTACTGAATGTGTTAGCTGTTGAAAGACCTACCCTCGGTGATTGGAAGTTTAAAGAGCCTCGAGATGTGTCCTTTATAAAACTTCACCCTGATATTGTTAAGCAACACGAAAAGGAATGGGACGCCAGAGAAGAAAAGATAACCGAATGTGTATATGGAGGAGGAAGTAAGAATTCTTCAAAGCGGACAAAGCCTACTACAGTGGATCGGCCAGTGGCATCTAAGAATTTGAATAAAGTTGCACCAAAAACTTCTAATGCAGCATCCTCTAGGCCATCAATGCCAGATGAAACTCGAGAAGCTTTACCGAAGGCCCTTCAGAAACTTTTTCAGTTTCACAAGGTTTGCAGCTTCGAACAAATATGTCAACGTTTGCGAGATACAGCTATTTCCGAGTCGGCACGTCCAAAAGGAGTGCCTAGAGAGTTGGTAGCTGCAGCAAAAGGTGTTGACTTTAGAGACGAGCTTCTTGAAATTGTCAATCAAGTTGCTATAGAGATTCATGGTGTCTTTGTTTGGAAATCATCTGTGGACCACCCACAGTATAATGATTTGAGGTTATTATTACTCATGAGTATTGTTATTGGTCTTCTTAAAGCCGAACGTAATGCAAAGCTTAAAAAGGCGGCTGTTATTGAAGCTGCGAAGATGCAACTTAACAGGGAGATAACTAACCCTGAATTTCAGAAGGTCATAAGCGAATTGTGTACATCGCAAGGTTCTGCATGGGTTTTGAAAAGTGGTGATGGAAATCCAAAATAA

Network for GWHGAAZE019591

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04801.14	Sin_N	77	442	3.50E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14721	RPC5, POLR3E	RNA polymerase	map03020
K14721	RPC5, POLR3E	Cytosolic DNA-sensing pathway	map04623

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.078
	SRR3591706	second leaf	4.423
	SRR3591707	mature leaf	4.133
	SRR3591708	Shoot apex	7.626
	SRR3591709	Stem	6.263
	SRR3591710	White floral bud	9.819
	SRR3591711	White flower	15.580
	SRR3591712	Green floral bud	9.888
	SRR3591713	Yellow flower	15.874
SRP173429	SRR8316895	Juvenile bud stage	5.953
	SRR8316896	Juvenile bud stage	6.562
	SRR8316897	Juvenile bud stage	4.486
	SRR8316894	Third green stage	3.336
	SRR8316900	Third green stage	8.114
	SRR8316901	Third green stage	7.974
	SRR8316898	Complete white stage	3.114
	SRR8316899	Complete white stage	13.026
	SRR8316903	Complete white stage	7.400
	SRR8316902	Silver flowering stage	4.516
	SRR8316904	Silver flowering stage	7.413
	SRR8316905	Silver flowering stage	3.488
	SRR8316906	Gold flowering stage	11.883
	SRR8316907	Gold flowering stage	10.374
	SRR8316908	Gold flowering stage	13.508
SRP132670	SRR6706286	Control	6.180
	SRR6706287	Light intensity 50%	5.690
	SRR6706288	Light intensity 20%	6.163
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.206
	CNS0095593	Slightly white alabastrum(diploid) 2	5.062
	CNS0095594	Slightly white alabastrum(diploid) 3	4.070
	CNS0095595	Whole white alabastrum(diploid) 2	2.892
	CNS0095596	Whole white alabastrum(diploid) 3	4.652
	CNS0095597	Whole white alabastrum(diploid) 4	4.098
	CNS0095598	Silvery flower (diploied) 1	5.778
	CNS0095599	Silvery flower (diploied) 2	3.323
	CNS0095600	Silvery flower (diploied) 3	10.678
	CNS0095601	Golden flower (diploid) 1	3.273
	CNS0095602	Golden flower (diploid) 2	7.874
	CNS0095603	Golden flower (diploid) 3	7.616
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.473
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.383
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.517
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.939
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.046
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.820
	CNS0095610	Silvery flower (tetraploid) 1	8.083
	CNS0095611	Silvery flower (tetraploid) 2	7.648
	CNS0095612	Silvery flower (tetraploid) 3	6.951
	CNS0095613	Golden flower (tetraploid) 1	3.095
	CNS0095614	Golden flower (tetraploid) 2	5.337
	CNS0095615	Golden flower (tetraploid) 3	5.587
CRA001975	CRR073297	Stem 1	6.153
	CRR073298	Stem 2	5.844
	CRR073299	Stem 3	4.935
	CRR073300	Leaf 1	8.229
	CRR073301	Leaf 2	6.895
	CRR073302	Leaf 3	6.750
	CRR073303	Juvenile bud 1	6.214
	CRR073304	Juvenile bud 2	3.289
	CRR073305	Juvenile bud 3	7.995
	CRR073306	Third green 1	2.045
	CRR073307	Third green 2	1.827
	CRR073308	Third green 3	2.503
	CRR073309	Second white 1	2.663
	CRR073310	Second white 2	5.166
	CRR073311	Second white 3	4.347
	CRR073312	Silver flowering 1	3.277
	CRR073313	Silver flowering 2	2.707
	CRR073314	Silver flowering 3	2.763
	CRR073315	Gold flowering 1	4.538
	CRR073316	Gold flowering 2	7.090
	CRR073317	Gold flowering 3	3.811
	CRR073318	Tawny withering 1	5.145
	CRR073319	Tawny withering 2	4.501
	CRR073320	Tawny withering 3	4.730