Detail information of GWHGAAZE019547


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011036799.10PREDICTED: probable linoleate 9S-lipoxygenase 5 [Populus euphratica]
Swissprottr|Q43191|LOX15_SOLTU0Probable linoleate 9S-lipoxygenase 5
trEMBLtr|A8W7J7|A8W7J7_CAMSI0Lipoxygenase {ECO:0000256|RuleBase:RU003975}
TAIR10AT1G55020.10lipoxygenase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene5049593150502841-
GWHAAZE00000005mRNA5049593150502841-
GWHAAZE00000005exon5050252750502841-
GWHAAZE00000005exon5050102950501273-
GWHAAZE00000005exon5049966850499752-
GWHAAZE00000005exon5049850250498865-
GWHAAZE00000005exon5049816350498248-
GWHAAZE00000005exon5049793150498038-
GWHAAZE00000005exon5049747450497778-
GWHAAZE00000005exon5049711850497381-
GWHAAZE00000005exon5049593150496684-
GWHAAZE00000005CDS5050252750502841-
GWHAAZE00000005CDS5050102950501273-
GWHAAZE00000005CDS5049966850499752-
GWHAAZE00000005CDS5049850250498865-
GWHAAZE00000005CDS5049816350498248-
GWHAAZE00000005CDS5049793150498038-
GWHAAZE00000005CDS5049747450497778-
GWHAAZE00000005CDS5049711850497381-
GWHAAZE00000005CDS5049593150496684-
Transcript Sequence

Network for GWHGAAZE019547

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01477.24PLAT111021.00E-11
PF00305.20Lipoxygenase1151885.50E-28
PF00305.20Lipoxygenase2218241.50E-280
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15718LOX1_5 Linoleic acid metabolism map00591

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0005515molecular_functionprotein binding
GO:0016491molecular_functionoxidoreductase activity
GO:0016702molecular_functionoxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.430
SRR3591706second leaf21.829
SRR3591707mature leaf17.224
SRR3591708Shoot apex1.998
SRR3591709Stem1.297
SRR3591710White floral bud80.246
SRR3591711White flower1.246
SRR3591712Green floral bud62.481
SRR3591713Yellow flower0.301
SRP173429 SRR8316895Juvenile bud stage 3.638
SRR8316896Juvenile bud stage 11.351
SRR8316897Juvenile bud stage 6.987
SRR8316894Third green stage 7.304
SRR8316900Third green stage 55.631
SRR8316901Third green stage 37.048
SRR8316898Complete white stage 0.459
SRR8316899Complete white stage 1.017
SRR8316903Complete white stage 0.252
SRR8316902Silver flowering stage0.216
SRR8316904Silver flowering stage0.436
SRR8316905Silver flowering stage0.067
SRR8316906Gold flowering stage 0.192
SRR8316907Gold flowering stage 0.135
SRR8316908Gold flowering stage 0.118
SRP132670SRR6706286Control59.966
SRR6706287Light intensity 50%64.576
SRR6706288Light intensity 20%71.267
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.290
CNS0095593Slightly white alabastrum(diploid) 20.107
CNS0095594Slightly white alabastrum(diploid) 30.271
CNS0095595Whole white alabastrum(diploid) 20.333
CNS0095596Whole white alabastrum(diploid) 30.517
CNS0095597Whole white alabastrum(diploid) 40.855
CNS0095598Silvery flower (diploied) 10.383
CNS0095599Silvery flower (diploied) 20.155
CNS0095600Silvery flower (diploied) 30.427
CNS0095601Golden flower (diploid) 10.017
CNS0095602Golden flower (diploid) 20.160
CNS0095603Golden flower (diploid) 30.018
CNS0095604Slightly white alabastrum(tetraploid) 10.747
CNS0095605Slightly white alabastrum(tetraploid) 20.986
CNS0095606Slightly white alabastrum(tetraploid) 30.069
CNS0095607Whole white alabastrum(tetraploid) 10.806
CNS0095608Whole white alabastrum(tetraploid) 20.628
CNS0095609Whole white alabastrum(tetraploid) 360.505
CNS0095610Silvery flower (tetraploid) 10.319
CNS0095611Silvery flower (tetraploid) 20.267
CNS0095612Silvery flower (tetraploid) 30.337
CNS0095613Golden flower (tetraploid) 10.065
CNS0095614Golden flower (tetraploid) 20.120
CNS0095615Golden flower (tetraploid) 30.452
CRA001975CRR073297Stem 15.073
CRR073298Stem 27.106
CRR073299Stem 35.722
CRR073300Leaf 18.388
CRR073301Leaf 22.858
CRR073302Leaf 311.129
CRR073303Juvenile bud 10.479
CRR073304Juvenile bud 25.853
CRR073305Juvenile bud 30.544
CRR073306Third green 11.198
CRR073307Third green 20.932
CRR073308Third green 31.445
CRR073309Second white 10.344
CRR073310Second white 20.656
CRR073311Second white 30.563
CRR073312Silver flowering 10.110
CRR073313Silver flowering 20.272
CRR073314Silver flowering 30.000
CRR073315Gold flowering 19.388
CRR073316Gold flowering 217.809
CRR073317Gold flowering 314.356
CRR073318Tawny withering 13.033
CRR073319Tawny withering 22.249
CRR073320Tawny withering 32.392