Gene detail

Detail information of GWHGAAZE019544

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010025195.1	PREDICTED: probable linoleate 9S-lipoxygenase 5 [Eucalyptus grandis]
Swissprot	tr\|Q43191\|LOX15_SOLTU	Probable linoleate 9S-lipoxygenase 5
trEMBL	tr\|A8W7J7\|A8W7J7_CAMSI	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT1G55020.1	lipoxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	50445891	50456857	+
GWHAAZE00000005	mRNA	50445891	50456857	+
GWHAAZE00000005	exon	50445891	50446062	+
GWHAAZE00000005	exon	50452215	50452471	+
GWHAAZE00000005	exon	50452994	50453171	+
GWHAAZE00000005	exon	50453877	50454218	+
GWHAAZE00000005	exon	50454440	50454525	+
GWHAAZE00000005	exon	50454731	50454838	+
GWHAAZE00000005	exon	50455089	50455273	+
GWHAAZE00000005	exon	50455398	50455661	+
GWHAAZE00000005	exon	50456104	50456857	+
GWHAAZE00000005	CDS	50445891	50446062	+
GWHAAZE00000005	CDS	50452215	50452471	+
GWHAAZE00000005	CDS	50452994	50453171	+
GWHAAZE00000005	CDS	50453877	50454218	+
GWHAAZE00000005	CDS	50454440	50454525	+
GWHAAZE00000005	CDS	50454731	50454838	+
GWHAAZE00000005	CDS	50455089	50455273	+
GWHAAZE00000005	CDS	50455398	50455661	+
GWHAAZE00000005	CDS	50456104	50456857	+

Transcript Sequence
>GWHTAAZE019566 ATGTTTCATAATATTGTGGAGGCTGTCTCAGGGGGAAATGAGAACAAAAGGAAGATTAAAGGGAGGGTTGTGTTGATGAAGAAGAATGTATTGGATTTCAATGACTTTGGAGCTTCTATTCTTGATAGAGTTCATGAATTGTTGGGGCAAAAAGTTTCTCTTCAACTTATCGCATTCTTGGAAGATTGGACTACCACAATTGCCCCTCTAACTCCTGGTGACACTGCATACAATGTCACATTTGATTGGGAAAAGAATATAGGATTTCCAGGGGCATTTTTGGTAAAAAATCTTCATCACAGTCAGTTTTATCTCAAGACACTCACACTTGAAGATGTTCCTGGACATGGCCGCGTCCATTTTGTTTGTAATTCTTGGGTTTATCCTGCTCACAAATACGAAACCGACCGTATTTTCTTCGTAAATCAGGCATATTTACCTAGTGAAACACCAGCACCTCTAAAAAAATATAGAGAACAAGAGCTAGTTAAGTTGAGAGGAACTGGCACTGGAATGCTGGAGGAATGGGACAGGGTTTACGACTATGCGTATTACAACGATTTAGGAGATCCTGATAAAGGCCCCGAAACTGCACGCCCGGTTCTTGATCCTAAAACTGAGAGTAGGTTGCCACTTCTTAAGAGCTTAAATATTTATGTCCCAAGAGATGAACGATTTGGGCACTTGAAGAAGTCTGATTTCCTTGCTAATGCTCTAAAATCTCTCGTCCAATTCCTTCTACCGGAGTTCGAGGCTTTTTGTGCCCAAACCCCTGATGAGTTCGACTCTTTTCAAGATGTGCTAAAGCTTTACGAAGGTGGAATCCAGCTACCAGATGGCCCTTTGCTCGACAAAATCAAAGAAAACATCCCCTTGGAAATGCTCAAGCAACTTCTTCAAATGGATGGTGAAGGACTCGCCAAATTCCCCATGCCACAAGTAATCAATGATGATAAGTCCGCATGGAGGACAGATGAAGAATTCGCAAGGGAAATGTTAGCCGGAGTTAACCCTGTCAACATCCAACGTCTCAAGGAGTTTCCTCCAACAAGCAAGCTTGATCCTAAAGTCTATGGAAACCAAAACAGTTCAATAACCAAAAATCACATAGAGAATAACCTTGATGGGCTAACAATAGAAGAGAAAGACGGGACACTGAAGCCATTAGTGATTGAACTAAGCTTGCCGAATCCACAAGGAGATCAATTCGGTGCCATTAGCAAAGTATTTACAGCAGTTGAAAATGGCGTCGAAGGTACCATTTGGCAGTTGGCTAAAGCATATGTTGCAGTGAATGACTCGGGCATTCATCAGCTCATCAACCACTGGTTGAACACACATGCGGTTATCGAGCCATTTGTGATTGCAACAAATAGGCAGCTAAGTGTTCTTCATCCAATTTATAAGCTTCTTCAACCACATTTTCGTGAAACAATGAATATAAATGCGGTCGCGAGGCAGATTCTCATCGGTGGAGGAGAAATTCTTGAGAAAACTGTTTTTCCCGGAAAATATTCCATGGAATTGTCATCCTTCGTTTACAAAAATTGGGTTTTTCCTGAACAAGCACTCCCTGCAGATCTCATCAAAAGGGGAATGGCAGTAGAGGACCCGAATTCTCCCCAAGGCCTTCGGCTACTAATTGAGGACTACCCATATGCCGTTGACGGGCTAAAAATCTGGTTCGCCATTGAGAACTGGGTGAAAGACTATTGCAATTTTTACTACAAGACCGATCATATGGTTCAAAATGACCCTGAGCTCCAGTCTTGGTGGAAGGAACTTAGAGAAGTGGGTCACGGTGACATAAAAGACGAGCCATGGTGGCCAAAAATGCAAACTAAGAACGAACTAGTCGATTCGTGCACTATCCTCATATGGGTAAGTAGTGCCCTCCACGCTGCACTTAATTTCGGGCAATACCCTTATGCGGGGTACCTACCGAACCGCCCTACCCTAAGTCGTAGGTTCATGCCTGAACCGGGCAGCCCCGAGTTTGCAGAACTCAAAACTAACCCCGAAAAGGCCTACTTGAAAACTATCACTCCCAAACTTCAAACATTACTTGGGGTGGCGCTTATAGAGCTTCTGTCAAGGCACCCCTCGGATGAGGTGTACCTTGGGAAAAGGGACACACCCGAGTGGACTAAGGACGAGGCGCCCTTGGCCGCGTTTGGCCGATTTGGAGAGAGGATTGGAGAAATTGAGAAAGAAATTATTGGAATGAACAAAGATGGTAAATGGAAGAATAGAGTTGGGCCTGTCAATGTGGAGTACACTTCGCTTTATCCTACAAGTGAAGTTGGTCTTACTGGCAAAGGGATTCCTAATAGTGTGTCTCTTTAG

Network for GWHGAAZE019544

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	60	140	8.80E-15
PF00305.20	Lipoxygenase	153	381	1.60E-73
PF00305.20	Lipoxygenase	381	764	1.10E-190

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15718	LOX1_5	Linoleic acid metabolism	map00591

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0005515	molecular_function	protein binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.536
	SRR3591706	second leaf	1.971
	SRR3591707	mature leaf	0.576
	SRR3591708	Shoot apex	2.525
	SRR3591709	Stem	6.850
	SRR3591710	White floral bud	1.054
	SRR3591711	White flower	1.350
	SRR3591712	Green floral bud	1.816
	SRR3591713	Yellow flower	5.067
SRP173429	SRR8316895	Juvenile bud stage	2.941
	SRR8316896	Juvenile bud stage	4.797
	SRR8316897	Juvenile bud stage	0.271
	SRR8316894	Third green stage	1.963
	SRR8316900	Third green stage	1.123
	SRR8316901	Third green stage	2.934
	SRR8316898	Complete white stage	0.023
	SRR8316899	Complete white stage	1.388
	SRR8316903	Complete white stage	0.459
	SRR8316902	Silver flowering stage	0.032
	SRR8316904	Silver flowering stage	0.036
	SRR8316905	Silver flowering stage	0.041
	SRR8316906	Gold flowering stage	0.084
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.439
SRP132670	SRR6706286	Control	1.026
	SRR6706287	Light intensity 50%	1.187
	SRR6706288	Light intensity 20%	1.200
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.629
	CNS0095593	Slightly white alabastrum(diploid) 2	7.010
	CNS0095594	Slightly white alabastrum(diploid) 3	4.455
	CNS0095595	Whole white alabastrum(diploid) 2	2.363
	CNS0095596	Whole white alabastrum(diploid) 3	0.636
	CNS0095597	Whole white alabastrum(diploid) 4	0.366
	CNS0095598	Silvery flower (diploied) 1	0.366
	CNS0095599	Silvery flower (diploied) 2	0.662
	CNS0095600	Silvery flower (diploied) 3	0.671
	CNS0095601	Golden flower (diploid) 1	0.705
	CNS0095602	Golden flower (diploid) 2	0.286
	CNS0095603	Golden flower (diploid) 3	0.193
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.798
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.752
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.735
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.260
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.418
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.596
	CNS0095610	Silvery flower (tetraploid) 1	0.145
	CNS0095611	Silvery flower (tetraploid) 2	0.732
	CNS0095612	Silvery flower (tetraploid) 3	0.623
	CNS0095613	Golden flower (tetraploid) 1	0.889
	CNS0095614	Golden flower (tetraploid) 2	0.371
	CNS0095615	Golden flower (tetraploid) 3	0.547
CRA001975	CRR073297	Stem 1	4.866
	CRR073298	Stem 2	6.443
	CRR073299	Stem 3	5.787
	CRR073300	Leaf 1	3.809
	CRR073301	Leaf 2	4.441
	CRR073302	Leaf 3	5.289
	CRR073303	Juvenile bud 1	1.945
	CRR073304	Juvenile bud 2	0.768
	CRR073305	Juvenile bud 3	3.952
	CRR073306	Third green 1	0.149
	CRR073307	Third green 2	0.210
	CRR073308	Third green 3	0.553
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.006
	CRR073313	Silver flowering 2	0.091
	CRR073314	Silver flowering 3	0.080
	CRR073315	Gold flowering 1	1.953
	CRR073316	Gold flowering 2	2.008
	CRR073317	Gold flowering 3	2.438
	CRR073318	Tawny withering 1	17.367
	CRR073319	Tawny withering 2	18.076
	CRR073320	Tawny withering 3	24.227