Gene detail

Detail information of GWHGAAZE019473

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644008.1	6.1103E-125	PREDICTED: receptor-like protein 12 [Vitis vinifera]
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	3E-69	Receptor-like protein 12 (Precursor)
trEMBL	tr\|F6GW00\|F6GW00_VITVI	1E-130	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44135.1}
TAIR10	AT3G05660.1	2E-74	receptor like protein 33

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	45005882	45007867	+
GWHAAZE00000005	mRNA	45005882	45007867	+
GWHAAZE00000005	exon	45005882	45006248	+
GWHAAZE00000005	exon	45006906	45007867	+
GWHAAZE00000005	CDS	45005882	45006248	+
GWHAAZE00000005	CDS	45006906	45007867	+

Transcript Sequence
>GWHTAAZE019495 ATGAGCAGTAATAGTCCTTTGAGGTGGATAGATATTTCATATTGCAACTTTTCTGGAGGTTTGATTGCCAACTTTTTTACTACGCTCCGACACCTAAGCCATCTAAATCTTCAATTTAATCATTTAAACGGTCCCATTCCGTCATCAATCGGTAACCTAACCGAACTTGTAGACTTAGACCTTTCGTCTAATTTACTAACAGGCTCCATTCCATCCTCAATTGGTCACCTAACCCAACTTTTAGACATAGACTTCTCATCTAATTCACTAACAGGCCCCATTCCATACTCGATTGGTAACCTAACCCAACTTGTAAACTTAGACCTCTCGTTTAATTCACTAACAGGCCCAATACCGTCCTCAATTGCTAATTGCAAAAGCCTAGAAATTCTTGATCTCGGAAACAACCACTTAAACGATACATTTCCAGTGTGGTTAGGAACTCTTCCGGAGTTGAAGGTTCTTGTCCTTAAATCAAATAGATTCCATGGCGTAATACCCAACAGTGCACAGACTAAATCTCCTTTCAGCAAGCTGCGAATAATCGACCTCTCCAACAATGAGTTTTCAGGCCTCATTCCATCAAAATATTTCAGATATTTCAAAGCCATGATGAAGGTGGAAGAAAATGGTAATGAGCCAAAATATATACACGGTGTTTATTATGAAGACTCTGTCAAAGTGGTCTTGAAAGGGATGGAGCGTGAATTGGTGAAAATTCTACTTGTGTTCACAACCATTGATATGTCCAATAACAAATTTGAAGGGGAGATTCCAAATTACATTGGAAATCTCTGGTCATTGAGAGAGCTCAACTTATCCCATAACAAGCTTGTAGGTCGTATTCCCCCATTGTTAGGGACTCTTTCTGTGCTTGAATCATTAGACCTTTCCTTTAACCAACTCGAAGGAGAGATTCCTCAACAGTTAACGGGTCTAATATCGCTTGCATTCTTAAACCTCTCGCAAAATCATCTTGTGGGCTGTATACCAAAAGGCAAACAGTTCAATACATTTGAAAATGATTCATACGGTGGGAACTCAGCATTGTGTGGGTTTCCGCTATCGAAAGATTGTGGAGGTGACGAGACACCACATCATCATTCCCCAACAAATCTTCAACAAGAAGACGATTCAAATTTTGAGAGTGGATTTACTTGGAAAGTTGTATGTTTGGGATACGGTTGTGGTACTATATTTGGATTGGTTATGGGGTACTTAATGTTCTTAACAGGAAAACCAAAACGGTTGACAGGACTTGTGGATAAATATCAATACAAAAATAGGTTGAAGAGAGGTCGTCAAAGGCGTGCAAGAGGAAGGAATTAA

Network for GWHGAAZE019473

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	103	162	6.00E-09
PF00560.34	LRR_1	178	194	1.1
PF00560.34	LRR_1	267	286	0.45
PF13516.7	LRR_6	291	305	0.81

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.467
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.313
	SRR3591709	Stem	0.153
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.082
	SRR3591712	Green floral bud	0.041
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.097
	SRR8316896	Juvenile bud stage	0.028
	SRR8316897	Juvenile bud stage	0.005
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.045
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.019
	SRR6706287	Light intensity 50%	0.037
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.004
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.037
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.002
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.102
	CNS0095603	Golden flower (diploid) 3	0.038
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.244
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.115
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.619
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.026
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.228
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.023
	CNS0095610	Silvery flower (tetraploid) 1	2.213
	CNS0095611	Silvery flower (tetraploid) 2	3.214
	CNS0095612	Silvery flower (tetraploid) 3	1.845
	CNS0095613	Golden flower (tetraploid) 1	0.165
	CNS0095614	Golden flower (tetraploid) 2	0.182
	CNS0095615	Golden flower (tetraploid) 3	0.213
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.014
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.006
	CRR073317	Gold flowering 3	0.068
	CRR073318	Tawny withering 1	2.421
	CRR073319	Tawny withering 2	1.739
	CRR073320	Tawny withering 3	2.654