Detail information of GWHGAAZE019412


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009766156.10PREDICTED: pectinesterase 2-like [Nicotiana sylvestris]
Swissprottr|O04887|PME2_CITSI0Pectinesterase 2 (Precursor)
trEMBLtr|A0A068VJU0|A0A068VJU0_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1911 {ECO:0000313|EMBL:CDP20872.1}
TAIR10AT2G45220.16E-117Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene4146163341464181+
GWHAAZE00000005mRNA4146163341464181+
GWHAAZE00000005exon4146163341462059+
GWHAAZE00000005exon4146223441462503+
GWHAAZE00000005exon4146349341464181+
GWHAAZE00000005CDS4146163341462059+
GWHAAZE00000005CDS4146223441462503+
GWHAAZE00000005CDS4146349341464181+
Transcript Sequence

Network for GWHGAAZE019412

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04043.16PMEI301451.40E-23
PF01095.20Pectinesterase1504461.60E-143
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01051E3.1.1.11 Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Two-component systemmap02020

Gene Ontology

GO term OntologyName
GO:0042545biological_processcell wall modification
GO:0004857molecular_functionenzyme inhibitor activity
GO:0030599molecular_functionpectinesterase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE019412.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30100200300400500600700800900100011001200Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.043
SRR3591710White floral bud0.026
SRR3591711White flower1.660
SRR3591712Green floral bud0.000
SRR3591713Yellow flower93.714
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.048
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.011
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.333
SRR8316899Complete white stage 0.026
SRR8316903Complete white stage 0.142
SRR8316902Silver flowering stage0.220
SRR8316904Silver flowering stage0.424
SRR8316905Silver flowering stage0.332
SRR8316906Gold flowering stage 33.921
SRR8316907Gold flowering stage 62.709
SRR8316908Gold flowering stage 12.578
SRP132670SRR6706286Control0.213
SRR6706287Light intensity 50%0.009
SRR6706288Light intensity 20%0.017
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.147
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.021
CNS0095595Whole white alabastrum(diploid) 20.070
CNS0095596Whole white alabastrum(diploid) 30.039
CNS0095597Whole white alabastrum(diploid) 40.148
CNS0095598Silvery flower (diploied) 10.621
CNS0095599Silvery flower (diploied) 21.351
CNS0095600Silvery flower (diploied) 33.032
CNS0095601Golden flower (diploid) 15.080
CNS0095602Golden flower (diploid) 2132.705
CNS0095603Golden flower (diploid) 3124.053
CNS0095604Slightly white alabastrum(tetraploid) 10.070
CNS0095605Slightly white alabastrum(tetraploid) 20.037
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.045
CNS0095608Whole white alabastrum(tetraploid) 20.021
CNS0095609Whole white alabastrum(tetraploid) 30.204
CNS0095610Silvery flower (tetraploid) 18.477
CNS0095611Silvery flower (tetraploid) 222.201
CNS0095612Silvery flower (tetraploid) 319.065
CNS0095613Golden flower (tetraploid) 197.989
CNS0095614Golden flower (tetraploid) 254.000
CNS0095615Golden flower (tetraploid) 396.087
CRA001975CRR073297Stem 10.391
CRR073298Stem 20.326
CRR073299Stem 30.282
CRR073300Leaf 10.153
CRR073301Leaf 20.400
CRR073302Leaf 30.221
CRR073303Juvenile bud 10.325
CRR073304Juvenile bud 20.362
CRR073305Juvenile bud 30.181
CRR073306Third green 10.413
CRR073307Third green 20.150
CRR073308Third green 30.288
CRR073309Second white 127.809
CRR073310Second white 243.522
CRR073311Second white 349.379
CRR073312Silver flowering 1604.859
CRR073313Silver flowering 21135.415
CRR073314Silver flowering 31134.341
CRR073315Gold flowering 10.040
CRR073316Gold flowering 20.163
CRR073317Gold flowering 30.112
CRR073318Tawny withering 10.202
CRR073319Tawny withering 20.173
CRR073320Tawny withering 30.151