Detail information of GWHGAAZE019385


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP17187.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068V9L2|A0A068V9L2_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_148 {ECO:0000313|EMBL:CDP17187.1}
TAIR10AT5G27730.11E-135Protein of unknown function (DUF1624)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene4007142940081338-
GWHAAZE00000005mRNA4007142940081338-
GWHAAZE00000005exon4007142940071584-
GWHAAZE00000005exon4007249040072633-
GWHAAZE00000005exon4007278740073019-
GWHAAZE00000005exon4007310640073187-
GWHAAZE00000005exon4007343140073497-
GWHAAZE00000005exon4007392940074021-
GWHAAZE00000005exon4007433540074465-
GWHAAZE00000005exon4007561940075739-
GWHAAZE00000005exon4007584040075955-
GWHAAZE00000005exon4007605640076132-
GWHAAZE00000005exon4007783140077912-
GWHAAZE00000005exon4007808940078172-
GWHAAZE00000005exon4008116840081338-
GWHAAZE00000005CDS4008116840081338-
GWHAAZE00000005CDS4007808940078172-
GWHAAZE00000005CDS4007783140077912-
GWHAAZE00000005CDS4007605640076132-
GWHAAZE00000005CDS4007584040075955-
GWHAAZE00000005CDS4007561940075739-
GWHAAZE00000005CDS4007433540074465-
GWHAAZE00000005CDS4007392940074021-
GWHAAZE00000005CDS4007343140073497-
GWHAAZE00000005CDS4007310640073187-
GWHAAZE00000005CDS4007278740073019-
GWHAAZE00000005CDS4007249040072633-
GWHAAZE00000005CDS4007142940071584-
Transcript Sequence

Network for GWHGAAZE019385

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10532HGSNAT Metabolic pathways map01100
Glycosaminoglycan degradationmap00531
Lysosomemap04142

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.492
SRR3591706second leaf3.751
SRR3591707mature leaf5.660
SRR3591708Shoot apex4.343
SRR3591709Stem2.757
SRR3591710White floral bud0.808
SRR3591711White flower0.689
SRR3591712Green floral bud1.281
SRR3591713Yellow flower0.231
SRP173429 SRR8316895Juvenile bud stage 0.610
SRR8316896Juvenile bud stage 0.660
SRR8316897Juvenile bud stage 0.737
SRR8316894Third green stage 0.326
SRR8316900Third green stage 0.584
SRR8316901Third green stage 0.516
SRR8316898Complete white stage 0.053
SRR8316899Complete white stage 1.247
SRR8316903Complete white stage 0.290
SRR8316902Silver flowering stage0.050
SRR8316904Silver flowering stage0.080
SRR8316905Silver flowering stage0.028
SRR8316906Gold flowering stage 0.082
SRR8316907Gold flowering stage 0.386
SRR8316908Gold flowering stage 0.670
SRP132670SRR6706286Control0.451
SRR6706287Light intensity 50%0.473
SRR6706288Light intensity 20%0.520
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.054
CNS0095593Slightly white alabastrum(diploid) 20.518
CNS0095594Slightly white alabastrum(diploid) 30.773
CNS0095595Whole white alabastrum(diploid) 21.068
CNS0095596Whole white alabastrum(diploid) 30.458
CNS0095597Whole white alabastrum(diploid) 40.412
CNS0095598Silvery flower (diploied) 12.622
CNS0095599Silvery flower (diploied) 21.032
CNS0095600Silvery flower (diploied) 30.296
CNS0095601Golden flower (diploid) 11.122
CNS0095602Golden flower (diploid) 20.788
CNS0095603Golden flower (diploid) 30.804
CNS0095604Slightly white alabastrum(tetraploid) 10.671
CNS0095605Slightly white alabastrum(tetraploid) 20.730
CNS0095606Slightly white alabastrum(tetraploid) 31.678
CNS0095607Whole white alabastrum(tetraploid) 10.410
CNS0095608Whole white alabastrum(tetraploid) 20.171
CNS0095609Whole white alabastrum(tetraploid) 30.820
CNS0095610Silvery flower (tetraploid) 10.375
CNS0095611Silvery flower (tetraploid) 20.797
CNS0095612Silvery flower (tetraploid) 30.438
CNS0095613Golden flower (tetraploid) 10.428
CNS0095614Golden flower (tetraploid) 20.731
CNS0095615Golden flower (tetraploid) 30.101
CRA001975CRR073297Stem 10.539
CRR073298Stem 20.309
CRR073299Stem 30.005
CRR073300Leaf 10.174
CRR073301Leaf 20.499
CRR073302Leaf 30.079
CRR073303Juvenile bud 10.108
CRR073304Juvenile bud 20.023
CRR073305Juvenile bud 30.359
CRR073306Third green 10.000
CRR073307Third green 20.008
CRR073308Third green 30.009
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.140
CRR073316Gold flowering 20.575
CRR073317Gold flowering 30.288
CRR073318Tawny withering 10.272
CRR073319Tawny withering 20.625
CRR073320Tawny withering 30.339