Detail information of GWHGAAZE019369


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAAK93589.22.19747E-08putative SF2/ASF splicing modulator Srp30 protein [Arabidopsis thaliana]
Swissprottr|Q9XFR5|SR30_ARATH3E-10Serine/arginine-rich splicing factor SR30
trEMBLtr|O80496|O80496_ARATH0.00000002T12M4.19 protein {ECO:0000313|EMBL:AAC24092.1}
TAIR10AT1G09140.10.00000002SERINE-ARGININE PROTEIN 30

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3953825139539378+
GWHAAZE00000005mRNA3953825139539378+
GWHAAZE00000005exon3953825139538329+
GWHAAZE00000005exon3953870339538745+
GWHAAZE00000005exon3953908739539378+
GWHAAZE00000005CDS3953825139538329+
GWHAAZE00000005CDS3953870339538745+
GWHAAZE00000005CDS3953908739539153+
GWHAAZE00000005three_prime_UTR3953915439539378+
Transcript Sequence

Network for GWHGAAZE019369

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12890SFRS1, ASF, SF2 Spliceosome map03040
IL-17 signaling pathwaymap04657

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.151
SRR3591706second leaf1.738
SRR3591707mature leaf1.135
SRR3591708Shoot apex1.581
SRR3591709Stem2.557
SRR3591710White floral bud4.619
SRR3591711White flower2.985
SRR3591712Green floral bud4.315
SRR3591713Yellow flower2.387
SRP173429 SRR8316895Juvenile bud stage 24.136
SRR8316896Juvenile bud stage 46.264
SRR8316897Juvenile bud stage 21.560
SRR8316894Third green stage 16.599
SRR8316900Third green stage 27.175
SRR8316901Third green stage 35.330
SRR8316898Complete white stage 4.540
SRR8316899Complete white stage 27.099
SRR8316903Complete white stage 15.158
SRR8316902Silver flowering stage5.266
SRR8316904Silver flowering stage8.485
SRR8316905Silver flowering stage4.426
SRR8316906Gold flowering stage 12.752
SRR8316907Gold flowering stage 10.095
SRR8316908Gold flowering stage 18.236
SRP132670SRR6706286Control17.361
SRR6706287Light intensity 50%21.158
SRR6706288Light intensity 20%23.115
CNP0000432CNS0095592Slightly white alabastrum(diploid) 143.002
CNS0095593Slightly white alabastrum(diploid) 243.892
CNS0095594Slightly white alabastrum(diploid) 335.020
CNS0095595Whole white alabastrum(diploid) 231.291
CNS0095596Whole white alabastrum(diploid) 323.919
CNS0095597Whole white alabastrum(diploid) 429.768
CNS0095598Silvery flower (diploied) 130.272
CNS0095599Silvery flower (diploied) 225.908
CNS0095600Silvery flower (diploied) 34.823
CNS0095601Golden flower (diploid) 125.723
CNS0095602Golden flower (diploid) 28.683
CNS0095603Golden flower (diploid) 38.442
CNS0095604Slightly white alabastrum(tetraploid) 125.572
CNS0095605Slightly white alabastrum(tetraploid) 221.937
CNS0095606Slightly white alabastrum(tetraploid) 314.016
CNS0095607Whole white alabastrum(tetraploid) 129.686
CNS0095608Whole white alabastrum(tetraploid) 229.634
CNS0095609Whole white alabastrum(tetraploid) 315.735
CNS0095610Silvery flower (tetraploid) 113.147
CNS0095611Silvery flower (tetraploid) 26.373
CNS0095612Silvery flower (tetraploid) 313.104
CNS0095613Golden flower (tetraploid) 110.910
CNS0095614Golden flower (tetraploid) 211.281
CNS0095615Golden flower (tetraploid) 37.726
CRA001975CRR073297Stem 124.898
CRR073298Stem 223.179
CRR073299Stem 32.708
CRR073300Leaf 133.212
CRR073301Leaf 228.111
CRR073302Leaf 32.763
CRR073303Juvenile bud 14.246
CRR073304Juvenile bud 20.493
CRR073305Juvenile bud 34.490
CRR073306Third green 10.224
CRR073307Third green 20.765
CRR073308Third green 30.048
CRR073309Second white 10.394
CRR073310Second white 20.341
CRR073311Second white 30.086
CRR073312Silver flowering 10.016
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.381
CRR073315Gold flowering 10.000
CRR073316Gold flowering 21.991
CRR073317Gold flowering 30.881
CRR073318Tawny withering 17.347
CRR073319Tawny withering 212.488
CRR073320Tawny withering 36.347