Detail information of GWHGAAZE019367


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010313168.11.107E-114PREDICTED: serine/arginine-rich splicing factor SR30 isoform X2 [Solanum lycopersicum]
Swissprottr|Q9XFR5|SR30_ARATH2E-94Serine/arginine-rich splicing factor SR30
trEMBLtr|K4B115|K4B115_SOLLC5E-115Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g099810.2.1}
TAIR10AT1G02840.33E-68RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3947686539487783-
GWHAAZE00000005mRNA3947686539487783-
GWHAAZE00000005exon3948770039487783-
GWHAAZE00000005exon3948405739484122-
GWHAAZE00000005exon3948359339483667-
GWHAAZE00000005exon3948337239483480-
GWHAAZE00000005exon3948283639482882-
GWHAAZE00000005exon3948261539482672-
GWHAAZE00000005exon3948242139482470-
GWHAAZE00000005exon3948218339482239-
GWHAAZE00000005exon3948168639481798-
GWHAAZE00000005exon3948148739481594-
GWHAAZE00000005exon3947816239478195-
GWHAAZE00000005exon3947697539477052-
GWHAAZE00000005exon3947686539476879-
GWHAAZE00000005CDS3948770039487783-
GWHAAZE00000005CDS3948405739484122-
GWHAAZE00000005CDS3948359339483667-
GWHAAZE00000005CDS3948337239483480-
GWHAAZE00000005CDS3948283639482882-
GWHAAZE00000005CDS3948261539482672-
GWHAAZE00000005CDS3948242139482470-
GWHAAZE00000005CDS3948218339482239-
GWHAAZE00000005CDS3948168639481798-
GWHAAZE00000005CDS3948148739481594-
GWHAAZE00000005CDS3947816239478195-
GWHAAZE00000005CDS3947697539477052-
GWHAAZE00000005CDS3947686539476879-
Transcript Sequence

Network for GWHGAAZE019367

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_18754.50E-19
PF00076.23RRM_11121755.90E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12890SFRS1, ASF, SF2 Spliceosome map03040
IL-17 signaling pathwaymap04657

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.088
SRR3591706second leaf15.309
SRR3591707mature leaf20.854
SRR3591708Shoot apex24.198
SRR3591709Stem20.845
SRR3591710White floral bud32.042
SRR3591711White flower43.937
SRR3591712Green floral bud25.063
SRR3591713Yellow flower36.130
SRP173429 SRR8316895Juvenile bud stage 17.412
SRR8316896Juvenile bud stage 22.525
SRR8316897Juvenile bud stage 16.626
SRR8316894Third green stage 7.723
SRR8316900Third green stage 23.214
SRR8316901Third green stage 23.704
SRR8316898Complete white stage 10.569
SRR8316899Complete white stage 28.071
SRR8316903Complete white stage 19.441
SRR8316902Silver flowering stage20.273
SRR8316904Silver flowering stage22.975
SRR8316905Silver flowering stage10.589
SRR8316906Gold flowering stage 33.972
SRR8316907Gold flowering stage 34.447
SRR8316908Gold flowering stage 44.519
SRP132670SRR6706286Control21.226
SRR6706287Light intensity 50%17.385
SRR6706288Light intensity 20%21.458
CNP0000432CNS0095592Slightly white alabastrum(diploid) 121.964
CNS0095593Slightly white alabastrum(diploid) 221.370
CNS0095594Slightly white alabastrum(diploid) 321.976
CNS0095595Whole white alabastrum(diploid) 217.903
CNS0095596Whole white alabastrum(diploid) 312.782
CNS0095597Whole white alabastrum(diploid) 415.918
CNS0095598Silvery flower (diploied) 122.951
CNS0095599Silvery flower (diploied) 228.625
CNS0095600Silvery flower (diploied) 334.267
CNS0095601Golden flower (diploid) 124.055
CNS0095602Golden flower (diploid) 230.800
CNS0095603Golden flower (diploid) 329.543
CNS0095604Slightly white alabastrum(tetraploid) 120.119
CNS0095605Slightly white alabastrum(tetraploid) 221.939
CNS0095606Slightly white alabastrum(tetraploid) 330.446
CNS0095607Whole white alabastrum(tetraploid) 114.606
CNS0095608Whole white alabastrum(tetraploid) 28.895
CNS0095609Whole white alabastrum(tetraploid) 325.408
CNS0095610Silvery flower (tetraploid) 146.468
CNS0095611Silvery flower (tetraploid) 239.509
CNS0095612Silvery flower (tetraploid) 337.319
CNS0095613Golden flower (tetraploid) 125.652
CNS0095614Golden flower (tetraploid) 234.015
CNS0095615Golden flower (tetraploid) 328.425
CRA001975CRR073297Stem 126.837
CRR073298Stem 222.832
CRR073299Stem 322.542
CRR073300Leaf 123.915
CRR073301Leaf 220.385
CRR073302Leaf 317.586
CRR073303Juvenile bud 120.537
CRR073304Juvenile bud 216.926
CRR073305Juvenile bud 320.888
CRR073306Third green 121.117
CRR073307Third green 218.400
CRR073308Third green 322.521
CRR073309Second white 123.594
CRR073310Second white 231.624
CRR073311Second white 322.016
CRR073312Silver flowering 135.029
CRR073313Silver flowering 237.527
CRR073314Silver flowering 341.616
CRR073315Gold flowering 121.011
CRR073316Gold flowering 228.144
CRR073317Gold flowering 321.952
CRR073318Tawny withering 122.773
CRR073319Tawny withering 230.741
CRR073320Tawny withering 323.388