Gene detail

Detail information of GWHGAAZE019356

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006349945.1	3.0408E-156	PREDICTED: receptor-like protein 12-like [Solanum tuberosum]
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	1E-81	Receptor-like protein 12 (Precursor)
trEMBL	tr\|F6GW00\|F6GW00_VITVI	2E-145	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44135.1}
TAIR10	AT5G25910.1	8E-82	receptor like protein 52

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	39159284	39161509	+
GWHAAZE00000005	mRNA	39159284	39161509	+
GWHAAZE00000005	exon	39159284	39160001	+
GWHAAZE00000005	exon	39160443	39161509	+
GWHAAZE00000005	CDS	39159284	39160001	+
GWHAAZE00000005	CDS	39160443	39161509	+

Transcript Sequence
>GWHTAAZE019378 ATGTTGCTACATAACTTAACCCAGTTGAGACAACTTTCTCTTTCACGGGTTAACATCTCTTTAGCAATATTTCCAGTGAATCTGTCTTCTTCTTTAACATTATTGGATCTTTCAGACACGGGATTGCACGGAAATTTACCGGATGAAGTTCTCCATCTCCCCAACTTGCAAAAGCTGAGGTTATCTTTCAACAGGGACCTCACCGTTTATTTTCCAAAAGCAGCTAATGTGAGAAGTAATAGTCCTTTGAGGTGGTTAGATCTTTTAGGTTGCAATGTTTTCGGAAACTTATCTGAATGGCTTGGGAACCTTACACATGTCACTCATTTGAGCCTCTCGAGTATCAACTTTTCTGTAGGTCTGATTCTCGACTCTGTTCTTAAACTCCGACACCTAAGCCATCTCGATCTTTATTTCAACAATTCCAACACTACCATTCCATCCTCGATTGGTAACCTAACCCAACTTGAATACTTGGACCTCTCAGCAAATTCACTAATAGGCGCCATTCCGTCATCAATTGGCAACCTAACCCAACTTGAACGCTTACTCCTCTCGTCTAATTCTCTAACAGGTCACATTCCGTCATCAATTGGCAACCTAACCCAACTTGAACACTTAGACCTCTCGAATAATTCACTAAAAGGCCCCATTCCGTCCTCGATTGACAACCTAACCCAACTTAAATACTTATTACTCTCGCTTAATTCACTAACAGGCACCATTCCAATAACATTTGCAAAAAGGAACATTTTCGAGTACCTTAATTTTAACAGCAATCTGTTGGAAGGAAAATTGCCACATACTTTGGCTAATTGCAAACAGCTAGAAGTTCTTGATCTCGGAAACAACCACTTAAACGATACATTCCCGGTGTGGTTAGGAGCTCTTCCGAAGTTAAAGGTTCTCATCTTTAAATCTAATATATTCCATGGCTCAATACCCAATAGTGTACATATCAAGTCTCCTTTCACCAATCTGAAAATAATCGACCTTTCTAACAATGAGTTTTCAGGCCGCATTCCATTAAAATATTTTAGATCTTTCAAGGCCATGATGGAGGTGCAAGGAAATAGTACTAAGCCAGAATATATGAGCAACGGGCATACCGGCATCTATTACGAATACTCTGTCACAGTGGTCATGAAAGGGACGGAGCGTGAATTGGAGAAAATTGTAACTACCTTCACAACCATTGATATGTCCAACAACAAATTCGAAGGTGAGATTCCGAATTACATCGGAAATCTTAGGTCATTAAGAGAGCTCAACTTATCCCATAACAAGCTTGTAGGTCATATTCCCCCATCGCTAGGGAAGCTTTCTGTGCTTGAATCGTTAGACCTTTCCTCTAACCAACTTGTAGGAGAGATTCCGCAACAGTTAACGGGTCTAACATCACTTGAATTCATAAACCTCTCGCAAAATCATCTTGTGGGTTGTATACCAAAAGGCAAACAATTTAATACATTTGAAAATAATTCGTACAGTGGGAACTCGGCATTACGTGGGTTTCCGTTATCAAAAGATTGTGGAGGTGAAGATACGCCACATCAACGTTCGCCAACAAATCTTCAACAAGATGACGATTCAGATTTTGGGAGTGGATTTACTTGGAAAGCCGTGTGTTTGGGATATGGTTGTGGAACTATACTTGGATTTGTTATGGGGTACTTAGTGTTCTTAACAGGAAAACCAAAATGGTTAGTTGGACTTGTGAAGGAATATCAATACAAGAATGGGATGAAGAGAGGTCATCAAAGGCGTGCCAGAAAAAGGAATTAA

Network for GWHGAAZE019356

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	155	177	0.45
PF13855.7	LRR_8	179	238	6.60E-09
PF13855.7	LRR_8	418	478	1.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.053
	SRR3591706	second leaf	0.109
	SRR3591707	mature leaf	1.656
	SRR3591708	Shoot apex	0.191
	SRR3591709	Stem	0.431
	SRR3591710	White floral bud	0.243
	SRR3591711	White flower	0.996
	SRR3591712	Green floral bud	0.446
	SRR3591713	Yellow flower	0.483
SRP173429	SRR8316895	Juvenile bud stage	1.148
	SRR8316896	Juvenile bud stage	1.858
	SRR8316897	Juvenile bud stage	0.042
	SRR8316894	Third green stage	0.397
	SRR8316900	Third green stage	0.498
	SRR8316901	Third green stage	0.651
	SRR8316898	Complete white stage	0.265
	SRR8316899	Complete white stage	4.577
	SRR8316903	Complete white stage	0.524
	SRR8316902	Silver flowering stage	0.058
	SRR8316904	Silver flowering stage	0.025
	SRR8316905	Silver flowering stage	0.024
	SRR8316906	Gold flowering stage	0.149
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.100
SRP132670	SRR6706286	Control	2.441
	SRR6706287	Light intensity 50%	1.937
	SRR6706288	Light intensity 20%	1.270
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.638
	CNS0095593	Slightly white alabastrum(diploid) 2	0.619
	CNS0095594	Slightly white alabastrum(diploid) 3	2.612
	CNS0095595	Whole white alabastrum(diploid) 2	0.736
	CNS0095596	Whole white alabastrum(diploid) 3	0.090
	CNS0095597	Whole white alabastrum(diploid) 4	0.330
	CNS0095598	Silvery flower (diploied) 1	2.379
	CNS0095599	Silvery flower (diploied) 2	1.049
	CNS0095600	Silvery flower (diploied) 3	0.443
	CNS0095601	Golden flower (diploid) 1	1.859
	CNS0095602	Golden flower (diploid) 2	1.303
	CNS0095603	Golden flower (diploid) 3	2.029
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.514
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.614
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.866
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.486
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.209
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.563
	CNS0095610	Silvery flower (tetraploid) 1	1.375
	CNS0095611	Silvery flower (tetraploid) 2	1.623
	CNS0095612	Silvery flower (tetraploid) 3	0.914
	CNS0095613	Golden flower (tetraploid) 1	0.601
	CNS0095614	Golden flower (tetraploid) 2	0.881
	CNS0095615	Golden flower (tetraploid) 3	0.302
CRA001975	CRR073297	Stem 1	0.505
	CRR073298	Stem 2	0.557
	CRR073299	Stem 3	0.247
	CRR073300	Leaf 1	0.130
	CRR073301	Leaf 2	0.465
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.097
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.177
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.073
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.046
	CRR073316	Gold flowering 2	10.040
	CRR073317	Gold flowering 3	6.899
	CRR073318	Tawny withering 1	1.687
	CRR073319	Tawny withering 2	5.342
	CRR073320	Tawny withering 3	0.509