Gene detail

Detail information of GWHGAAZE019347

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008388523.1	2.05025E-23	PREDICTED: pre-mRNA-splicing factor SF2-like isoform X2 [Malus domestica]
Swissprot	tr\|O22315\|SR34_ARATH	3E-16	Serine/arginine-rich-splicing factor SR34
trEMBL	tr\|A0A059B6U8\|A0A059B6U8_EUCGR	9E-23	Uncharacterized protein {ECO:0000313\|EMBL:KCW61848.1}
TAIR10	AT1G09140.1	9E-13	SERINE-ARGININE PROTEIN 30

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	38929487	38935396	+
GWHAAZE00000005	mRNA	38929487	38935396	+
GWHAAZE00000005	exon	38929487	38929556	+
GWHAAZE00000005	exon	38930941	38930983	+
GWHAAZE00000005	exon	38932323	38932360	+
GWHAAZE00000005	exon	38933161	38933195	+
GWHAAZE00000005	exon	38933302	38933359	+
GWHAAZE00000005	exon	38933772	38933800	+
GWHAAZE00000005	exon	38933892	38933936	+
GWHAAZE00000005	exon	38934295	38934407	+
GWHAAZE00000005	exon	38934498	38934605	+
GWHAAZE00000005	exon	38935357	38935396	+
GWHAAZE00000005	CDS	38929487	38929556	+
GWHAAZE00000005	CDS	38930941	38930983	+
GWHAAZE00000005	CDS	38932323	38932360	+
GWHAAZE00000005	CDS	38933161	38933195	+
GWHAAZE00000005	CDS	38933302	38933359	+
GWHAAZE00000005	CDS	38933772	38933800	+
GWHAAZE00000005	CDS	38933892	38933936	+
GWHAAZE00000005	CDS	38934295	38934407	+
GWHAAZE00000005	CDS	38934498	38934605	+
GWHAAZE00000005	CDS	38935357	38935396	+

Transcript Sequence
>GWHTAAZE019369 ATGAAAGGAGAGTTGAGTGTAGTGGTGGAGATGCGGCGCTGGTCGGTGGGCAGTGGTCAAAGAGATATAGGCATGAGAGGGATTGTGGACTATGCAAACTACGATGATATGCGGCTCGTTCTGAGTCATATCCTCCTCGCTCTATTTCCAGGATTACCTTCTTCTGCTTCATGGCATGATTTGAAGGATCACATGTGCCGAGCTGGGGATGTCTGTTTCTCTCAAGTTTTCCGTGATCGTGATGCCTCAATTCTGTTAGAGGTGGACTTCGCGATAAGGAAGCTTGATGGAATTCATTCTCTTGAGGCCTACATAAGGGTCGAGGAGTATGATCGAAGACGTAGCTACTCAAGGAGTCCCAGTAGGAGCCCATATATTTCAAGAAGCAGAAGCCCAAGTCTCAGCTATAGCTACAGTGGAAGGAGCAGAAGCGTCTCTCCTAGAGCTAAACGTTCTCACCGGTCTCTATCTAGATCTCGTTCGAGGTCTGTTTCTTTACGGGCTCGTTCTGAGTCATATCCTTCTTGTTCTGTTTCCAGGGGTGTGTTTGGGATCCTCAATTCCATGGCTTCGAATTAG

Network for GWHGAAZE019347

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12890	SFRS1, ASF, SF2	Spliceosome	map03040
K12890	SFRS1, ASF, SF2	IL-17 signaling pathway	map04657

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.061
	SRR3591708	Shoot apex	0.082
	SRR3591709	Stem	0.163
	SRR3591710	White floral bud	6.304
	SRR3591711	White flower	2.337
	SRR3591712	Green floral bud	6.479
	SRR3591713	Yellow flower	2.705
SRP173429	SRR8316895	Juvenile bud stage	7.309
	SRR8316896	Juvenile bud stage	8.941
	SRR8316897	Juvenile bud stage	11.256
	SRR8316894	Third green stage	4.976
	SRR8316900	Third green stage	13.374
	SRR8316901	Third green stage	9.244
	SRR8316898	Complete white stage	3.594
	SRR8316899	Complete white stage	15.495
	SRR8316903	Complete white stage	6.795
	SRR8316902	Silver flowering stage	2.892
	SRR8316904	Silver flowering stage	3.719
	SRR8316905	Silver flowering stage	1.756
	SRR8316906	Gold flowering stage	5.579
	SRR8316907	Gold flowering stage	7.298
	SRR8316908	Gold flowering stage	8.333
SRP132670	SRR6706286	Control	7.254
	SRR6706287	Light intensity 50%	9.467
	SRR6706288	Light intensity 20%	10.459
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.028
	CNS0095593	Slightly white alabastrum(diploid) 2	13.692
	CNS0095594	Slightly white alabastrum(diploid) 3	7.950
	CNS0095595	Whole white alabastrum(diploid) 2	10.457
	CNS0095596	Whole white alabastrum(diploid) 3	10.326
	CNS0095597	Whole white alabastrum(diploid) 4	13.535
	CNS0095598	Silvery flower (diploied) 1	19.797
	CNS0095599	Silvery flower (diploied) 2	13.316
	CNS0095600	Silvery flower (diploied) 3	9.007
	CNS0095601	Golden flower (diploid) 1	17.055
	CNS0095602	Golden flower (diploid) 2	9.856
	CNS0095603	Golden flower (diploid) 3	9.406
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.797
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.912
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.654
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.237
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.250
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.273
	CNS0095610	Silvery flower (tetraploid) 1	0.439
	CNS0095611	Silvery flower (tetraploid) 2	0.240
	CNS0095612	Silvery flower (tetraploid) 3	0.438
	CNS0095613	Golden flower (tetraploid) 1	0.192
	CNS0095614	Golden flower (tetraploid) 2	0.056
	CNS0095615	Golden flower (tetraploid) 3	0.017
CRA001975	CRR073297	Stem 1	4.979
	CRR073298	Stem 2	6.228
	CRR073299	Stem 3	2.173
	CRR073300	Leaf 1	7.147
	CRR073301	Leaf 2	8.011
	CRR073302	Leaf 3	3.009
	CRR073303	Juvenile bud 1	5.543
	CRR073304	Juvenile bud 2	1.641
	CRR073305	Juvenile bud 3	3.812
	CRR073306	Third green 1	2.162
	CRR073307	Third green 2	1.751
	CRR073308	Third green 3	1.118
	CRR073309	Second white 1	1.021
	CRR073310	Second white 2	1.826
	CRR073311	Second white 3	0.548
	CRR073312	Silver flowering 1	0.808
	CRR073313	Silver flowering 2	0.298
	CRR073314	Silver flowering 3	0.619
	CRR073315	Gold flowering 1	3.282
	CRR073316	Gold flowering 2	4.026
	CRR073317	Gold flowering 3	1.879
	CRR073318	Tawny withering 1	6.329
	CRR073319	Tawny withering 2	7.726
	CRR073320	Tawny withering 3	8.148