Gene detail

Detail information of GWHGAAZE019343

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006444361.1	4.88396E-66	hypothetical protein CICLE_v10022870mg [Citrus clementina]
Swissprot	tr\|Q9M9W1\|RL222_ARATH	6E-64	60S ribosomal protein L22-2
trEMBL	tr\|A0A067HH07\|A0A067HH07_CITSI	2E-66	Uncharacterized protein {ECO:0000313\|EMBL:KDO87201.1}
TAIR10	AT3G05560.3	3E-44	Ribosomal L22e protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	38662896	38665428	-
GWHAAZE00000005	mRNA	38662896	38665428	-
GWHAAZE00000005	exon	38665193	38665428	-
GWHAAZE00000005	exon	38662896	38663221	-
GWHAAZE00000005	CDS	38665193	38665428	-
GWHAAZE00000005	CDS	38663077	38663221	-
GWHAAZE00000005	three_prime_UTR	38662896	38663076	-

Transcript Sequence
>GWHTAAZE019365 ATGAGTCGAGGAGGTGCGGCAGGTGGTGCCAAGGGAGGGAAGAAGAAGGGATCGACGTTCACGATCGACTGCGGGAAGCCGGTCGAGGATAAGATTATGGAGATCGCTTCACTGGAAAAGTTTCTCCAGGAGAGGATTAAGGTCGGCGGTAAAGCTGGAGCTCTCGGTGATTCTGTTACTGTTACTCGCGAGAAGAGTAAGATTACTGTCACTTCTGACAGTAATTTCTCCAAGAGGTACTTGAAGTACTTGACAAAAAAGTACCTAAAGAAGAACAATGTGAGGGACTGGCTCAGGGTGATAGCCTCAAACAAGGACAGGAATGTTTATGAATTGCGATACTTCAATATTGCCGAAAACGAAGGTGAGGAGGAAGACTGATACTGTCGAATTGGTTTTTTCATAGAATGAAAGTGAGTTGGAAGATTGATAATGTGGAATCACTTCTTCTAATCATTTATGATCGTAAACTTCTGTAATAGTCGTAGATTTTGTCGAAGTTTAATTTTGGAATTTGCGTGCAATGCATTTTTGCTACTTTTGGACGTGGAAATGTGTGTTG

Network for GWHGAAZE019343

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01776.18	Ribosomal_L22e	16	124	6.70E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02891	RP-L22e, RPL22	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	97.020
	SRR3591706	second leaf	37.203
	SRR3591707	mature leaf	14.413
	SRR3591708	Shoot apex	108.804
	SRR3591709	Stem	49.731
	SRR3591710	White floral bud	27.664
	SRR3591711	White flower	42.774
	SRR3591712	Green floral bud	77.367
	SRR3591713	Yellow flower	36.384
SRP173429	SRR8316895	Juvenile bud stage	71.741
	SRR8316896	Juvenile bud stage	101.625
	SRR8316897	Juvenile bud stage	68.744
	SRR8316894	Third green stage	40.855
	SRR8316900	Third green stage	130.332
	SRR8316901	Third green stage	120.744
	SRR8316898	Complete white stage	18.795
	SRR8316899	Complete white stage	92.228
	SRR8316903	Complete white stage	27.926
	SRR8316902	Silver flowering stage	18.685
	SRR8316904	Silver flowering stage	18.527
	SRR8316905	Silver flowering stage	11.258
	SRR8316906	Gold flowering stage	30.967
	SRR8316907	Gold flowering stage	37.352
	SRR8316908	Gold flowering stage	45.523
SRP132670	SRR6706286	Control	118.229
	SRR6706287	Light intensity 50%	118.012
	SRR6706288	Light intensity 20%	132.358
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	171.842
	CNS0095593	Slightly white alabastrum(diploid) 2	185.742
	CNS0095594	Slightly white alabastrum(diploid) 3	147.231
	CNS0095595	Whole white alabastrum(diploid) 2	133.256
	CNS0095596	Whole white alabastrum(diploid) 3	155.951
	CNS0095597	Whole white alabastrum(diploid) 4	97.688
	CNS0095598	Silvery flower (diploied) 1	73.095
	CNS0095599	Silvery flower (diploied) 2	65.542
	CNS0095600	Silvery flower (diploied) 3	43.098
	CNS0095601	Golden flower (diploid) 1	54.213
	CNS0095602	Golden flower (diploid) 2	37.397
	CNS0095603	Golden flower (diploid) 3	35.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	127.480
	CNS0095605	Slightly white alabastrum(tetraploid) 2	138.587
	CNS0095606	Slightly white alabastrum(tetraploid) 3	156.941
	CNS0095607	Whole white alabastrum(tetraploid) 1	66.212
	CNS0095608	Whole white alabastrum(tetraploid) 2	66.570
	CNS0095609	Whole white alabastrum(tetraploid) 3	120.707
	CNS0095610	Silvery flower (tetraploid) 1	52.951
	CNS0095611	Silvery flower (tetraploid) 2	40.187
	CNS0095612	Silvery flower (tetraploid) 3	23.044
	CNS0095613	Golden flower (tetraploid) 1	32.646
	CNS0095614	Golden flower (tetraploid) 2	46.925
	CNS0095615	Golden flower (tetraploid) 3	13.777
CRA001975	CRR073297	Stem 1	52.017
	CRR073298	Stem 2	56.566
	CRR073299	Stem 3	52.976
	CRR073300	Leaf 1	55.999
	CRR073301	Leaf 2	57.440
	CRR073302	Leaf 3	55.507
	CRR073303	Juvenile bud 1	48.639
	CRR073304	Juvenile bud 2	28.175
	CRR073305	Juvenile bud 3	31.364
	CRR073306	Third green 1	6.244
	CRR073307	Third green 2	5.011
	CRR073308	Third green 3	6.837
	CRR073309	Second white 1	10.222
	CRR073310	Second white 2	10.932
	CRR073311	Second white 3	11.069
	CRR073312	Silver flowering 1	8.496
	CRR073313	Silver flowering 2	8.197
	CRR073314	Silver flowering 3	7.405
	CRR073315	Gold flowering 1	27.388
	CRR073316	Gold flowering 2	21.542
	CRR073317	Gold flowering 3	24.703
	CRR073318	Tawny withering 1	68.193
	CRR073319	Tawny withering 2	59.404
	CRR073320	Tawny withering 3	71.008