Gene detail

Detail information of GWHGAAZE019308

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17202.1	6.1934E-173	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M9W3\|PP19_ARATH	3E-173	Serine/threonine-protein phosphatase PP1 isozyme 9
trEMBL	tr\|A0A068V9M2\|A0A068V9M2_COFCA	2E-173	Serine/threonine-protein phosphatase {ECO:0000256\|RuleBase:RU004273}
TAIR10	AT3G05580.1	1E-137	Calcineurin-like metallo-phosphoesterase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	36986877	36991371	+
GWHAAZE00000005	mRNA	36986877	36991371	+
GWHAAZE00000005	exon	36986877	36986949	+
GWHAAZE00000005	exon	36989481	36990040	+
GWHAAZE00000005	exon	36991144	36991371	+
GWHAAZE00000005	CDS	36986877	36986949	+
GWHAAZE00000005	CDS	36989481	36990040	+
GWHAAZE00000005	CDS	36991144	36991371	+

Transcript Sequence
>GWHTAAZE019330 ATGAATATGATGACAATGGAAGGGATGATGGATAAGGGGGTATTGGATGATATAATAAGGAGGTTATTGGAAGGTGATATACATGGACAATACCAAGACCTGTTGAGGCTTTTTGAATATGGTGGGTACCCACCAGCTGCAAACTACCTCTTTCTCGGTGATTACGTCGATCGAGGAAAGCAAAGTTTGGAAACTATATGCTTGCTTCTGGCCTACAAGATAAGGTACCCAGATAGATTTTTCCTCTTGAGGGGAAACCATGAAGATGCAAAAATCAACCGTATCTATGGATTTTATGACGAATGTAAAAGAAGATTCAATGTTCGACTTTGGAAGATTTTTACGGATTGCTTTAATTGTTTGCCTGTTGCTGCCCTCATTGATGAGAAGATATTGTGTATGCATGGTGGGCTTTCTCCAGAACTCGAAAATTTGGACAAAATAGTTGAGATTCAAAGGCCCACCGAGATTCCTGATAATGGGCTCTTATGTGATTTGCTCTGGTCTGATCCGGATCCGGGTATTGAGGGTTGGTCGGACAGTGATCGAGGAGTTTCGTGTACTTTTGGAGCTGATAGGGTCGCTGACTTTTTGGACAAGAATGACCTTGACCTCATTTGCCGTGGTCATCAGGTGGTGGAGGATGGATACGAGTTCTTTGCGAAAAGGAGACTGGTGACTATTTTTTCAGCTCCAAACTATGGTGGGGAGTTTGATAATGCAGGTGCTCTTCTAAGTGTCGACAAATCGTTGGTGTGTTCTTTTGAGATATTGAAACCTATTCTTGATAAGGAATCAAGCAGTTCTAAGGTTCCTCTTAGAAAGGTAAATTGCCATTCAACTGTTCTTATTTTTGGTTAA

Network for GWHGAAZE019308

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.29	Metallophos	25	212	3.90E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06269	PPP1C	mRNA surveillance pathway	map03015
		Hippo signaling pathway	map04390
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		Focal adhesion	map04510
		Regulation of actin cytoskeleton	map04810
		Platelet activation	map04611
		Insulin signaling pathway	map04910
		Oxytocin signaling pathway	map04921
		Adrenergic signaling in cardiomyocytes	map04261
		Vascular smooth muscle contraction	map04270
		Dopaminergic synapse	map04728
		Long-term potentiation	map04720
		Inflammatory mediator regulation of TRP channels	map04750

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.172
	SRR3591706	second leaf	17.251
	SRR3591707	mature leaf	28.534
	SRR3591708	Shoot apex	19.108
	SRR3591709	Stem	79.434
	SRR3591710	White floral bud	75.015
	SRR3591711	White flower	72.898
	SRR3591712	Green floral bud	58.069
	SRR3591713	Yellow flower	64.435
SRP173429	SRR8316895	Juvenile bud stage	32.597
	SRR8316896	Juvenile bud stage	54.632
	SRR8316897	Juvenile bud stage	24.916
	SRR8316894	Third green stage	17.442
	SRR8316900	Third green stage	77.009
	SRR8316901	Third green stage	84.257
	SRR8316898	Complete white stage	40.603
	SRR8316899	Complete white stage	125.550
	SRR8316903	Complete white stage	59.311
	SRR8316902	Silver flowering stage	28.226
	SRR8316904	Silver flowering stage	29.639
	SRR8316905	Silver flowering stage	18.209
	SRR8316906	Gold flowering stage	37.991
	SRR8316907	Gold flowering stage	34.368
	SRR8316908	Gold flowering stage	35.929
SRP132670	SRR6706286	Control	50.944
	SRR6706287	Light intensity 50%	53.382
	SRR6706288	Light intensity 20%	52.787
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.433
	CNS0095593	Slightly white alabastrum(diploid) 2	48.413
	CNS0095594	Slightly white alabastrum(diploid) 3	44.798
	CNS0095595	Whole white alabastrum(diploid) 2	49.240
	CNS0095596	Whole white alabastrum(diploid) 3	51.380
	CNS0095597	Whole white alabastrum(diploid) 4	48.588
	CNS0095598	Silvery flower (diploied) 1	35.687
	CNS0095599	Silvery flower (diploied) 2	38.626
	CNS0095600	Silvery flower (diploied) 3	56.401
	CNS0095601	Golden flower (diploid) 1	37.542
	CNS0095602	Golden flower (diploid) 2	50.479
	CNS0095603	Golden flower (diploid) 3	53.162
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.645
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.584
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.347
	CNS0095607	Whole white alabastrum(tetraploid) 1	48.125
	CNS0095608	Whole white alabastrum(tetraploid) 2	49.745
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.809
	CNS0095610	Silvery flower (tetraploid) 1	31.140
	CNS0095611	Silvery flower (tetraploid) 2	32.952
	CNS0095612	Silvery flower (tetraploid) 3	71.066
	CNS0095613	Golden flower (tetraploid) 1	28.236
	CNS0095614	Golden flower (tetraploid) 2	33.748
	CNS0095615	Golden flower (tetraploid) 3	52.067
CRA001975	CRR073297	Stem 1	51.626
	CRR073298	Stem 2	45.594
	CRR073299	Stem 3	49.520
	CRR073300	Leaf 1	87.716
	CRR073301	Leaf 2	74.449
	CRR073302	Leaf 3	79.751
	CRR073303	Juvenile bud 1	78.117
	CRR073304	Juvenile bud 2	82.206
	CRR073305	Juvenile bud 3	70.069
	CRR073306	Third green 1	65.037
	CRR073307	Third green 2	56.847
	CRR073308	Third green 3	59.043
	CRR073309	Second white 1	39.386
	CRR073310	Second white 2	49.315
	CRR073311	Second white 3	37.932
	CRR073312	Silver flowering 1	52.423
	CRR073313	Silver flowering 2	48.166
	CRR073314	Silver flowering 3	39.335
	CRR073315	Gold flowering 1	36.322
	CRR073316	Gold flowering 2	39.570
	CRR073317	Gold flowering 3	37.725
	CRR073318	Tawny withering 1	55.088
	CRR073319	Tawny withering 2	34.075
	CRR073320	Tawny withering 3	55.606