Gene detail

Detail information of GWHGAAZE019228

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG03950.1	2.0325E-149	Proteasome subunit alpha type-2-A -like protein [Gossypium arboreum]
Swissprot	tr\|O23708\|PSA2A_ARATH	6E-142	Proteasome subunit alpha type-2-A
trEMBL	tr\|M1API7\|M1API7_SOLTU	2E-148	Proteasome subunit alpha type {ECO:0000256\|RuleBase:RU000551}
TAIR10	AT1G16470.2	3E-112	proteasome subunit PAB1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	34461729	34468378	+
GWHAAZE00000005	mRNA	34461729	34468378	+
GWHAAZE00000005	exon	34461729	34461799	+
GWHAAZE00000005	exon	34462284	34462360	+
GWHAAZE00000005	exon	34463033	34463097	+
GWHAAZE00000005	exon	34463262	34463308	+
GWHAAZE00000005	exon	34464756	34464831	+
GWHAAZE00000005	exon	34465553	34465620	+
GWHAAZE00000005	exon	34466306	34466375	+
GWHAAZE00000005	exon	34466987	34467072	+
GWHAAZE00000005	exon	34467990	34468052	+
GWHAAZE00000005	exon	34468330	34468378	+
GWHAAZE00000005	CDS	34461729	34461799	+
GWHAAZE00000005	CDS	34462284	34462360	+
GWHAAZE00000005	CDS	34463033	34463097	+
GWHAAZE00000005	CDS	34463262	34463308	+
GWHAAZE00000005	CDS	34464756	34464831	+
GWHAAZE00000005	CDS	34465553	34465620	+
GWHAAZE00000005	CDS	34466306	34466375	+
GWHAAZE00000005	CDS	34466987	34467072	+
GWHAAZE00000005	CDS	34467990	34468052	+
GWHAAZE00000005	CDS	34468330	34468378	+

Transcript Sequence
>GWHTAAZE019250 CTCTCTTTCTTTAGTTTAATTCAACACACAATGGGTGATAGCCAGTACTCTTTCTCTCTCACCACTTTCAGTCCTTCTGGGAAGCTTGTTCAAATTGAACATGCATTAACAGCTGTTGGATCTGGTCAAACATCTTTAGGGATTAAAGCTGCCAATGGTGTTGTTATTGCGACAGAAAAAAAACTACCATCTATCTTGGTAGATGAAACATCTGTGCAAAAGATTCAGATTTTGACCCCAAATATTGGAGTTGTATACAGTGGCATGGGCCCGGATTCTCGAGTTTTGGTTCGAAAAAGTAGGAAGCAGGCAGAACAATATCATCGATTATACAAAGAACCAATCCCTGTTACACAACTTGTCAGGGAAACTGCTGCTGTCATGCAAGAGTTCACTCAATCAGGTGGTGTAAGGCCTTTTGGTGTTTCACTCCTGGTTGCTGGCTTTGATGACAAGGGTCCCCAGCTATATCAGGTGGATCCATCAGGTTCTTACTTCTCGTGGAAAGCTTCGGCCATGGGAAAGAACGTTTCTAACGCGAAGACATTTCTTGAGAAGAGGTACACGGACGATATGGAACTTGACGATGCTGTACACACTGCTATTTTGACTCTAAAAGAAGGAGTTCTCACGCCTGCGGAAATTGAAGACTATCTGCAGGAAGTGGAATAG

Network for GWHGAAZE019228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10584.10	Proteasome_A_N	16	38	6.20E-09
PF00227.27	Proteasome	41	208	1.00E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02726	PSMA2	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0019773	cellular_component	proteasome core complex, alpha-subunit complex
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	82.742
	SRR3591706	second leaf	52.954
	SRR3591707	mature leaf	30.583
	SRR3591708	Shoot apex	71.321
	SRR3591709	Stem	55.074
	SRR3591710	White floral bud	63.179
	SRR3591711	White flower	102.300
	SRR3591712	Green floral bud	86.065
	SRR3591713	Yellow flower	91.800
SRP173429	SRR8316895	Juvenile bud stage	45.452
	SRR8316896	Juvenile bud stage	61.696
	SRR8316897	Juvenile bud stage	41.004
	SRR8316894	Third green stage	28.355
	SRR8316900	Third green stage	89.189
	SRR8316901	Third green stage	74.741
	SRR8316898	Complete white stage	33.568
	SRR8316899	Complete white stage	79.938
	SRR8316903	Complete white stage	37.544
	SRR8316902	Silver flowering stage	25.418
	SRR8316904	Silver flowering stage	28.400
	SRR8316905	Silver flowering stage	12.875
	SRR8316906	Gold flowering stage	67.571
	SRR8316907	Gold flowering stage	54.576
	SRR8316908	Gold flowering stage	70.917
SRP132670	SRR6706286	Control	96.727
	SRR6706287	Light intensity 50%	95.124
	SRR6706288	Light intensity 20%	99.764
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.066
	CNS0095593	Slightly white alabastrum(diploid) 2	61.546
	CNS0095594	Slightly white alabastrum(diploid) 3	48.714
	CNS0095595	Whole white alabastrum(diploid) 2	53.777
	CNS0095596	Whole white alabastrum(diploid) 3	52.420
	CNS0095597	Whole white alabastrum(diploid) 4	43.614
	CNS0095598	Silvery flower (diploied) 1	37.103
	CNS0095599	Silvery flower (diploied) 2	40.055
	CNS0095600	Silvery flower (diploied) 3	56.539
	CNS0095601	Golden flower (diploid) 1	31.719
	CNS0095602	Golden flower (diploid) 2	50.274
	CNS0095603	Golden flower (diploid) 3	47.530
	CNS0095604	Slightly white alabastrum(tetraploid) 1	76.587
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.684
	CNS0095606	Slightly white alabastrum(tetraploid) 3	85.431
	CNS0095607	Whole white alabastrum(tetraploid) 1	44.767
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.558
	CNS0095609	Whole white alabastrum(tetraploid) 3	75.290
	CNS0095610	Silvery flower (tetraploid) 1	63.141
	CNS0095611	Silvery flower (tetraploid) 2	68.568
	CNS0095612	Silvery flower (tetraploid) 3	44.032
	CNS0095613	Golden flower (tetraploid) 1	53.589
	CNS0095614	Golden flower (tetraploid) 2	66.940
	CNS0095615	Golden flower (tetraploid) 3	50.906
CRA001975	CRR073297	Stem 1	63.850
	CRR073298	Stem 2	59.506
	CRR073299	Stem 3	69.543
	CRR073300	Leaf 1	73.600
	CRR073301	Leaf 2	72.808
	CRR073302	Leaf 3	81.003
	CRR073303	Juvenile bud 1	84.328
	CRR073304	Juvenile bud 2	74.245
	CRR073305	Juvenile bud 3	58.105
	CRR073306	Third green 1	17.883
	CRR073307	Third green 2	23.418
	CRR073308	Third green 3	22.332
	CRR073309	Second white 1	28.173
	CRR073310	Second white 2	31.415
	CRR073311	Second white 3	18.565
	CRR073312	Silver flowering 1	17.298
	CRR073313	Silver flowering 2	13.528
	CRR073314	Silver flowering 3	11.423
	CRR073315	Gold flowering 1	36.970
	CRR073316	Gold flowering 2	26.482
	CRR073317	Gold flowering 3	24.394
	CRR073318	Tawny withering 1	62.852
	CRR073319	Tawny withering 2	49.032
	CRR073320	Tawny withering 3	60.777