Gene detail

Detail information of GWHGAAZE019227

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011082554.1	7.2039E-165	PREDICTED: proteasome subunit beta type-4-like [Sesamum indicum]
Swissprot	tr\|Q7DLR9\|PSB4_ARATH	1E-148	Proteasome subunit beta type-4 (Precursor)
trEMBL	tr\|M1AE64\|M1AE64_SOLTU	1E-163	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT1G56450.1	1E-117	20S proteasome beta subunit G1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	34438317	34442801	+
GWHAAZE00000005	mRNA	34438317	34442801	+
GWHAAZE00000005	exon	34438317	34438441	+
GWHAAZE00000005	exon	34438542	34438606	+
GWHAAZE00000005	exon	34439050	34439126	+
GWHAAZE00000005	exon	34439666	34439795	+
GWHAAZE00000005	exon	34439937	34440096	+
GWHAAZE00000005	exon	34440177	34440362	+
GWHAAZE00000005	exon	34442688	34442801	+
GWHAAZE00000005	five_prime_UTR	34438317	34438435	+
GWHAAZE00000005	CDS	34438436	34438441	+
GWHAAZE00000005	CDS	34438542	34438606	+
GWHAAZE00000005	CDS	34439050	34439126	+
GWHAAZE00000005	CDS	34439666	34439795	+
GWHAAZE00000005	CDS	34439937	34440096	+
GWHAAZE00000005	CDS	34440177	34440362	+
GWHAAZE00000005	CDS	34442688	34442801	+

Transcript Sequence
>GWHTAAZE019249 AAGTTGTAGGGAAAACAAAAATTCATCCTTTACGAATCTCATCAGAAACCTACTCTCATCCTTTGTTCCAACTTCCTTCAAATCCTTCTTAGTTCAACGATCAAATCTAAATTCCAACAATGAACTTGGTTGATTCAACTCCAACTAATAACAGCTTAATGATCTCCGAAGCTTCATCTGAAAGAACGCTGTATCCATATGTGACGGGCACATCTGTGCTTGGCATCAAATACAAGGATGGCATTCTTATGGCTGCCGATATGGGAGGGTCATATGGTTCTACCCTGCGTTACAAGAGCGTGGAGCGAATGAAGCCAGTTGGGAAGCACTCTCTTATTGGTGCAAGTGGAGAAATTAGCGATTTCCAAGAGATTATGCGTTCTCTTGACAACCTTATCTTGTACGACAATATGTGGGATGATGGAAATTCCTTGGGCCCTAAAGAGGTCCACAACTATTTAACTCGTATGATGTACAACCGTCGCAACAAATTCGACCCTTTGTGGAATTCACTTGTACTTGGTGGAGTGAAAAATGGACAGAAGTATCTTGGAACGGTTAGTATGATCGGTGTACATTATGAGGACAATCATGTTGCCACTGGATTTGGAAATCACCTTGCTCGGCCAATTTTCCGTGATGAATGGCACGAGAACATGAGTTTCGAGGATGGTGTTAAGTTATTAGAGAAATGCATGCGTGTTCTTCTATATCGGGATAGGTCTGCCATCAACAAGCTTCAGATAGCCAAAATAACAGAAGAGGGTGTAACAGTTTCTCAGCCCTACTCTTTGAAGACCTTCTGGAATTTTGCTGCTTTTCAGAATCCAACCCTTGGGGCTGAGGGGTCGTGGTAG

Network for GWHGAAZE019227

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	29	212	1.70E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02736	PSMB4	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0004175	molecular_function	endopeptidase activity
GO:0004298	molecular_function	threonine-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	122.620
	SRR3591706	second leaf	63.782
	SRR3591707	mature leaf	50.046
	SRR3591708	Shoot apex	101.741
	SRR3591709	Stem	87.522
	SRR3591710	White floral bud	104.597
	SRR3591711	White flower	190.020
	SRR3591712	Green floral bud	126.453
	SRR3591713	Yellow flower	193.603
SRP173429	SRR8316895	Juvenile bud stage	89.794
	SRR8316896	Juvenile bud stage	114.330
	SRR8316897	Juvenile bud stage	79.575
	SRR8316894	Third green stage	55.245
	SRR8316900	Third green stage	188.306
	SRR8316901	Third green stage	174.455
	SRR8316898	Complete white stage	72.495
	SRR8316899	Complete white stage	187.364
	SRR8316903	Complete white stage	100.052
	SRR8316902	Silver flowering stage	74.063
	SRR8316904	Silver flowering stage	99.277
	SRR8316905	Silver flowering stage	40.689
	SRR8316906	Gold flowering stage	172.549
	SRR8316907	Gold flowering stage	156.165
	SRR8316908	Gold flowering stage	193.322
SRP132670	SRR6706286	Control	96.537
	SRR6706287	Light intensity 50%	107.795
	SRR6706288	Light intensity 20%	131.937
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	125.234
	CNS0095593	Slightly white alabastrum(diploid) 2	136.470
	CNS0095594	Slightly white alabastrum(diploid) 3	119.880
	CNS0095595	Whole white alabastrum(diploid) 2	109.508
	CNS0095596	Whole white alabastrum(diploid) 3	126.047
	CNS0095597	Whole white alabastrum(diploid) 4	107.444
	CNS0095598	Silvery flower (diploied) 1	89.977
	CNS0095599	Silvery flower (diploied) 2	100.503
	CNS0095600	Silvery flower (diploied) 3	157.808
	CNS0095601	Golden flower (diploid) 1	83.132
	CNS0095602	Golden flower (diploid) 2	130.811
	CNS0095603	Golden flower (diploid) 3	127.224
	CNS0095604	Slightly white alabastrum(tetraploid) 1	161.996
	CNS0095605	Slightly white alabastrum(tetraploid) 2	150.285
	CNS0095606	Slightly white alabastrum(tetraploid) 3	228.653
	CNS0095607	Whole white alabastrum(tetraploid) 1	103.392
	CNS0095608	Whole white alabastrum(tetraploid) 2	106.610
	CNS0095609	Whole white alabastrum(tetraploid) 3	198.562
	CNS0095610	Silvery flower (tetraploid) 1	202.238
	CNS0095611	Silvery flower (tetraploid) 2	190.617
	CNS0095612	Silvery flower (tetraploid) 3	142.411
	CNS0095613	Golden flower (tetraploid) 1	180.095
	CNS0095614	Golden flower (tetraploid) 2	177.273
	CNS0095615	Golden flower (tetraploid) 3	192.609
CRA001975	CRR073297	Stem 1	96.956
	CRR073298	Stem 2	100.205
	CRR073299	Stem 3	122.773
	CRR073300	Leaf 1	114.001
	CRR073301	Leaf 2	112.466
	CRR073302	Leaf 3	169.836
	CRR073303	Juvenile bud 1	163.273
	CRR073304	Juvenile bud 2	158.921
	CRR073305	Juvenile bud 3	124.321
	CRR073306	Third green 1	64.903
	CRR073307	Third green 2	72.917
	CRR073308	Third green 3	66.482
	CRR073309	Second white 1	103.273
	CRR073310	Second white 2	89.810
	CRR073311	Second white 3	72.612
	CRR073312	Silver flowering 1	61.619
	CRR073313	Silver flowering 2	63.469
	CRR073314	Silver flowering 3	54.898
	CRR073315	Gold flowering 1	74.632
	CRR073316	Gold flowering 2	88.728
	CRR073317	Gold flowering 3	61.139
	CRR073318	Tawny withering 1	91.646
	CRR073319	Tawny withering 2	87.762
	CRR073320	Tawny withering 3	111.917