Gene detail

Detail information of GWHGAAZE019201

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004230291.1	0	PREDICTED: protein disulfide-isomerase like 2-1 [Solanum lycopersicum]
Swissprot	tr\|P38661\|PDIA6_MEDSA	0	Probable protein disulfide-isomerase A6 (Precursor)
trEMBL	tr\|K4B166\|K4B166_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g100320.2.1}
TAIR10	AT2G47470.1	5E-146	thioredoxin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	33682267	33692687	+
GWHAAZE00000005	mRNA	33682267	33692687	+
GWHAAZE00000005	exon	33682267	33682424	+
GWHAAZE00000005	exon	33683566	33683601	+
GWHAAZE00000005	exon	33684567	33684651	+
GWHAAZE00000005	exon	33686046	33686143	+
GWHAAZE00000005	exon	33686315	33686370	+
GWHAAZE00000005	exon	33687482	33687599	+
GWHAAZE00000005	exon	33687777	33687804	+
GWHAAZE00000005	exon	33688398	33688489	+
GWHAAZE00000005	exon	33689382	33689538	+
GWHAAZE00000005	exon	33689625	33689749	+
GWHAAZE00000005	exon	33691810	33691909	+
GWHAAZE00000005	exon	33692622	33692687	+
GWHAAZE00000005	CDS	33682267	33682424	+
GWHAAZE00000005	CDS	33683566	33683601	+
GWHAAZE00000005	CDS	33684567	33684651	+
GWHAAZE00000005	CDS	33686046	33686143	+
GWHAAZE00000005	CDS	33686315	33686370	+
GWHAAZE00000005	CDS	33687482	33687599	+
GWHAAZE00000005	CDS	33687777	33687804	+
GWHAAZE00000005	CDS	33688398	33688489	+
GWHAAZE00000005	CDS	33689382	33689538	+
GWHAAZE00000005	CDS	33689625	33689749	+
GWHAAZE00000005	CDS	33691810	33691909	+
GWHAAZE00000005	CDS	33692622	33692687	+

Transcript Sequence
>GWHTAAZE019223 ATGTCGAGTTCATCAATGATCTGTATAGCATTCGGAACCCTAGCTCTGTTCCTTTTCTCATCTTTGGTCCTAGCAGACGTCGTGGTTTTAACACAAGACAACTTCGAGAAAGAGGTCGGCCAAGATCGTGCTGCTCTCGTTGAATTCTACGCTCCTTGGCCTTTGGATTGGTATTTTCAGTTGCAACTGGAAATGTGTGGGCACTGTAAAAAACTTGCGCCTGAGTATGAACAGCTTGGTGCAACTTTCAAGAAGGCAAAATCTGTTTTGATTGGAAAGGTGGACTGTGATGAGCATAAGAGCATTTGTAGCAAATATAGGGTGTCTGGGTACCCCACCATCAAATGGTTTCCCAAGGGGTCGTTGAAGCCCAGAGAATATGAAGGAGCACGTAATGCAGAAGCCCTTACTGCATTTGTAAATATGGAAGGAGGGACCAATGTAAAATTAGCTACAATCCCATCACATGTGGTGGTACTAAGTTCAGATAACTTTGATAATATTGTTCTTGATGACACAAAGGATGTCCTGGTTGAGTTCTATGCACCCTGGTGTGGCCATTGCAAGAACCTTGCTCCTACTTATGAAAAGGTTGCAACTGCTTTTAGCATGGAGGAAGATGTAGTTATTGCTAATCTTGATGCTGACAAGTACAAGGATCTTGCGGAGAAGTATGGTGTTGGCGGTTTTCCTACATTGAAATTCTTCCCAAAAAACAATAAAGCTGGTGAAGATTATGATGGCGAGCGAGATTTAGAAGACTTCGTTTCTTTCATCAACGAGAAGTGTGGTACCAGTCGAGATGAGAAAGGACAACTCACTTCCTCGGCGGGTATAGTTGCAGATTTGGATAATTTAGTGAAAGAATTTTTAAGTGCTAGCAATGACGAGAAGAATTCAATTTTTGCCCGGATGGAGGAGGAAGTTGGTATTCTCAAAGGTTCCGCAGCCAGATATGGAAAGATCTACTTGAAAGCTGCCAAGACTTTTATGGATAAAGGTTCTGATTATGCCAAGAATGAAATTCAGCGGCTTGAACGTATTCTTGCTAAGTCAATTAGCTCAGGGAAGGCCGATGAGTTCACACTGAAGAAGAATATATTGTCTACCTTCGCTTGA

Network for GWHGAAZE019201

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.21	Thioredoxin	27	141	2.50E-26
PF00085.21	Thioredoxin	157	260	2.20E-32
PF07749.13	ERp29	278	371	2.60E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09584	PDIA6, TXNDC7	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0045454	biological_process	cell redox homeostasis
GO:0005783	cellular_component	endoplasmic reticulum
GO:0016853	molecular_function	isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.993
	SRR3591706	second leaf	2.760
	SRR3591707	mature leaf	3.899
	SRR3591708	Shoot apex	7.997
	SRR3591709	Stem	2.875
	SRR3591710	White floral bud	2.743
	SRR3591711	White flower	2.711
	SRR3591712	Green floral bud	18.994
	SRR3591713	Yellow flower	0.874
SRP173429	SRR8316895	Juvenile bud stage	12.871
	SRR8316896	Juvenile bud stage	34.037
	SRR8316897	Juvenile bud stage	11.562
	SRR8316894	Third green stage	11.012
	SRR8316900	Third green stage	24.057
	SRR8316901	Third green stage	30.989
	SRR8316898	Complete white stage	0.764
	SRR8316899	Complete white stage	2.703
	SRR8316903	Complete white stage	0.599
	SRR8316902	Silver flowering stage	0.152
	SRR8316904	Silver flowering stage	0.241
	SRR8316905	Silver flowering stage	0.118
	SRR8316906	Gold flowering stage	0.912
	SRR8316907	Gold flowering stage	0.577
	SRR8316908	Gold flowering stage	0.775
SRP132670	SRR6706286	Control	14.976
	SRR6706287	Light intensity 50%	12.436
	SRR6706288	Light intensity 20%	10.997
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.999
	CNS0095593	Slightly white alabastrum(diploid) 2	30.836
	CNS0095594	Slightly white alabastrum(diploid) 3	53.011
	CNS0095595	Whole white alabastrum(diploid) 2	45.107
	CNS0095596	Whole white alabastrum(diploid) 3	66.378
	CNS0095597	Whole white alabastrum(diploid) 4	34.763
	CNS0095598	Silvery flower (diploied) 1	1.413
	CNS0095599	Silvery flower (diploied) 2	1.924
	CNS0095600	Silvery flower (diploied) 3	0.770
	CNS0095601	Golden flower (diploid) 1	1.417
	CNS0095602	Golden flower (diploid) 2	0.892
	CNS0095603	Golden flower (diploid) 3	0.491
	CNS0095604	Slightly white alabastrum(tetraploid) 1	72.500
	CNS0095605	Slightly white alabastrum(tetraploid) 2	85.877
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.119
	CNS0095607	Whole white alabastrum(tetraploid) 1	70.347
	CNS0095608	Whole white alabastrum(tetraploid) 2	53.556
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.416
	CNS0095610	Silvery flower (tetraploid) 1	4.210
	CNS0095611	Silvery flower (tetraploid) 2	2.004
	CNS0095612	Silvery flower (tetraploid) 3	1.286
	CNS0095613	Golden flower (tetraploid) 1	2.436
	CNS0095614	Golden flower (tetraploid) 2	1.569
	CNS0095615	Golden flower (tetraploid) 3	0.908
CRA001975	CRR073297	Stem 1	9.892
	CRR073298	Stem 2	9.353
	CRR073299	Stem 3	5.730
	CRR073300	Leaf 1	12.205
	CRR073301	Leaf 2	13.506
	CRR073302	Leaf 3	11.471
	CRR073303	Juvenile bud 1	5.403
	CRR073304	Juvenile bud 2	5.233
	CRR073305	Juvenile bud 3	2.189
	CRR073306	Third green 1	0.467
	CRR073307	Third green 2	0.185
	CRR073308	Third green 3	0.829
	CRR073309	Second white 1	1.083
	CRR073310	Second white 2	0.240
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.916
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.575
	CRR073316	Gold flowering 2	1.990
	CRR073317	Gold flowering 3	1.374
	CRR073318	Tawny withering 1	3.165
	CRR073319	Tawny withering 2	3.442
	CRR073320	Tawny withering 3	3.755