Detail information of GWHGAAZE019199


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHN43340.11.27624E-67Zinc finger matrin-type protein 2 [Glycine soja]
trEMBLtr|I1JR59|I1JR59_SOYBN6E-67Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G39120.1}
TAIR10AT3G05760.12E-52C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3366990333673334-
GWHAAZE00000005mRNA3366990333673334-
GWHAAZE00000005exon3366990333669989-
GWHAAZE00000005exon3367007533670127-
GWHAAZE00000005exon3367023933670317-
GWHAAZE00000005exon3367152733671559-
GWHAAZE00000005exon3367298033673062-
GWHAAZE00000005exon3367329533673334-
GWHAAZE00000005CDS3367329533673334-
GWHAAZE00000005CDS3367298033673062-
GWHAAZE00000005CDS3367152733671559-
GWHAAZE00000005CDS3367023933670317-
GWHAAZE00000005CDS3367007533670127-
GWHAAZE00000005CDS3366990333669989-
Transcript Sequence

Network for GWHGAAZE019199

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12874.8zf-met55794.10E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12848SNU23 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.282
SRR3591706second leaf14.191
SRR3591707mature leaf16.277
SRR3591708Shoot apex17.885
SRR3591709Stem19.982
SRR3591710White floral bud24.620
SRR3591711White flower30.057
SRR3591712Green floral bud21.748
SRR3591713Yellow flower37.185
SRP173429 SRR8316895Juvenile bud stage 14.936
SRR8316896Juvenile bud stage 19.753
SRR8316897Juvenile bud stage 10.101
SRR8316894Third green stage 8.813
SRR8316900Third green stage 26.691
SRR8316901Third green stage 24.087
SRR8316898Complete white stage 10.045
SRR8316899Complete white stage 35.985
SRR8316903Complete white stage 16.130
SRR8316902Silver flowering stage15.610
SRR8316904Silver flowering stage19.398
SRR8316905Silver flowering stage11.695
SRR8316906Gold flowering stage 38.626
SRR8316907Gold flowering stage 32.653
SRR8316908Gold flowering stage 35.054
SRP132670SRR6706286Control25.465
SRR6706287Light intensity 50%24.199
SRR6706288Light intensity 20%23.355
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.454
CNS0095593Slightly white alabastrum(diploid) 232.390
CNS0095594Slightly white alabastrum(diploid) 337.064
CNS0095595Whole white alabastrum(diploid) 228.035
CNS0095596Whole white alabastrum(diploid) 330.142
CNS0095597Whole white alabastrum(diploid) 428.614
CNS0095598Silvery flower (diploied) 136.716
CNS0095599Silvery flower (diploied) 232.440
CNS0095600Silvery flower (diploied) 328.257
CNS0095601Golden flower (diploid) 130.060
CNS0095602Golden flower (diploid) 225.392
CNS0095603Golden flower (diploid) 323.663
CNS0095604Slightly white alabastrum(tetraploid) 123.657
CNS0095605Slightly white alabastrum(tetraploid) 225.076
CNS0095606Slightly white alabastrum(tetraploid) 324.091
CNS0095607Whole white alabastrum(tetraploid) 116.068
CNS0095608Whole white alabastrum(tetraploid) 221.332
CNS0095609Whole white alabastrum(tetraploid) 321.750
CNS0095610Silvery flower (tetraploid) 126.892
CNS0095611Silvery flower (tetraploid) 226.945
CNS0095612Silvery flower (tetraploid) 332.348
CNS0095613Golden flower (tetraploid) 136.784
CNS0095614Golden flower (tetraploid) 231.107
CNS0095615Golden flower (tetraploid) 330.662
CRA001975CRR073297Stem 125.774
CRR073298Stem 226.036
CRR073299Stem 329.868
CRR073300Leaf 130.234
CRR073301Leaf 233.855
CRR073302Leaf 327.068
CRR073303Juvenile bud 132.884
CRR073304Juvenile bud 226.705
CRR073305Juvenile bud 326.314
CRR073306Third green 125.516
CRR073307Third green 228.105
CRR073308Third green 327.472
CRR073309Second white 120.871
CRR073310Second white 253.304
CRR073311Second white 327.141
CRR073312Silver flowering 127.000
CRR073313Silver flowering 219.520
CRR073314Silver flowering 329.672
CRR073315Gold flowering 135.012
CRR073316Gold flowering 241.260
CRR073317Gold flowering 313.605
CRR073318Tawny withering 134.248
CRR073319Tawny withering 248.661
CRR073320Tawny withering 352.883