Gene detail

Detail information of GWHGAAZE019189

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004158720.1	0	PREDICTED: LOW QUALITY PROTEIN: calreticulin-like [Cucumis sativus]
Swissprot	tr\|Q9XF98\|CALR_PRUAR	0	Calreticulin (Precursor)
trEMBL	tr\|V4KII7\|V4KII7_EUTSA	0	Uncharacterized protein {ECO:0000313\|EMBL:ESQ29722.1}
TAIR10	AT1G56340.2	2E-162	calreticulin 1a

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	33543649	33546924	+
GWHAAZE00000005	mRNA	33543649	33546924	+
GWHAAZE00000005	exon	33543649	33543823	+
GWHAAZE00000005	exon	33543980	33544172	+
GWHAAZE00000005	exon	33544278	33544536	+
GWHAAZE00000005	exon	33544622	33544678	+
GWHAAZE00000005	exon	33544788	33544835	+
GWHAAZE00000005	exon	33544920	33545006	+
GWHAAZE00000005	exon	33545091	33545148	+
GWHAAZE00000005	exon	33545242	33545309	+
GWHAAZE00000005	exon	33545399	33545494	+
GWHAAZE00000005	exon	33545582	33545629	+
GWHAAZE00000005	exon	33546383	33546412	+
GWHAAZE00000005	exon	33546913	33546924	+
GWHAAZE00000005	CDS	33543649	33543823	+
GWHAAZE00000005	CDS	33543980	33544172	+
GWHAAZE00000005	CDS	33544278	33544536	+
GWHAAZE00000005	CDS	33544622	33544678	+
GWHAAZE00000005	CDS	33544788	33544835	+
GWHAAZE00000005	CDS	33544920	33545006	+
GWHAAZE00000005	CDS	33545091	33545148	+
GWHAAZE00000005	CDS	33545242	33545309	+
GWHAAZE00000005	CDS	33545399	33545494	+
GWHAAZE00000005	CDS	33545582	33545629	+
GWHAAZE00000005	CDS	33546383	33546412	+
GWHAAZE00000005	CDS	33546913	33546924	+

Transcript Sequence
>GWHTAAZE019211 ATGGATAAGCTTTATCGTTGGCTTTTGTGTTCTTGTAATTATATGTGTAACCTGCTGGATTTTTTAGATGGATGGGATAAACGGTGGGTCAAATCTGACTGGAAGAAGGATGAGAACACGGCTGGGGAGTGGAATTTTACTGCTGGTAAATGGCATGGAGACCCTAATGATAAAGGCATCCAGACCAGCGAAGACTACAGGTTTTATGCTATTTCAGCTGAGTTCCCTGAATTCAGCAACAAGGATAGGACACTAGTTTTCCAATTTTCTGTCAAGCATGAACAAAAGCTTGACTGTGGTGGTGGGTACATGAAGTTGCTAAGTGGCGAAGTTGATCAAAAGAAATTCGGTGGTGATACCCCATACAGCATCATGTTTGGACCTGATATTTGTGGCTATAGCACCAAGAAAGTCCATGCTATTCTTACGTACAATGGTACAAATCACTTGATTAAGAAGGATGTCCCTTGTGAGACTGACCAACTTACTCATGTTTACACGTTCATACTCCGCCCTGATGCTACCTACAGCATCCTCATTGACAATGAAGAGAAGCAGACTGGTAGTTTGTACTCTGATTGGAGTCTTCTCCCACCAAAGAAAATCAAGGACCCCGAGGCCAAAAAGCCTGAAGATTGGGAGGACAAGGAATTCATTCCTGACCCTGAAGATAAGAAGCCAGAGGGCTATGATGATATACCAAAGGAGATTACTGATGTTGATGCCAAAAAGCCTGAAGACTGGGATGATGAAGAAGATGGTGAGTGGACAGCCCCAACTATTCCAAACCCAGACTACAAGGGCCCATGGGAACCAAAGAAAATTAAAAATCCCAACTACAAAGGAAAGTGGAAGGCACCTATGATTGACAACCCAGATTTCAAAGATGATCCAGATATCTATGTTTTCCCAAAACTTAGATATGTTGGCATAGAACTGTGGCAGGTAAAGTCTGGAACTTTGTTTGACAATGTCTTGCTCGCTGATGACCCTGCATACGCCAAGAAGCTGGCCGAAGAAACATGGGGAAAGCACAAAGAGGTTGAGAAGGCAGCTTTTGAGGAGGCAGAAAAGAAGAAAGAGGAGGAGGAAGCAAAGGCCGATCCCATTGATTCTGATGATGAACTGTAG

Network for GWHGAAZE019189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00262.19	Calreticulin	23	252	1.20E-57
PF00262.19	Calreticulin	254	326	4.00E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08057	CALR	Protein processing in endoplasmic reticulum	map04141
		Phagosome	map04145
		Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0005783	cellular_component	endoplasmic reticulum
GO:0005509	molecular_function	calcium ion binding
GO:0051082	molecular_function	unfolded protein binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	879.342
	SRR3591706	second leaf	447.452
	SRR3591707	mature leaf	200.426
	SRR3591708	Shoot apex	854.074
	SRR3591709	Stem	363.278
	SRR3591710	White floral bud	480.297
	SRR3591711	White flower	422.880
	SRR3591712	Green floral bud	555.923
	SRR3591713	Yellow flower	1440.231
SRP173429	SRR8316895	Juvenile bud stage	530.976
	SRR8316896	Juvenile bud stage	534.717
	SRR8316897	Juvenile bud stage	328.589
	SRR8316894	Third green stage	250.949
	SRR8316900	Third green stage	732.866
	SRR8316901	Third green stage	609.811
	SRR8316898	Complete white stage	230.385
	SRR8316899	Complete white stage	483.890
	SRR8316903	Complete white stage	421.015
	SRR8316902	Silver flowering stage	245.004
	SRR8316904	Silver flowering stage	352.493
	SRR8316905	Silver flowering stage	194.739
	SRR8316906	Gold flowering stage	603.931
	SRR8316907	Gold flowering stage	656.216
	SRR8316908	Gold flowering stage	521.749
SRP132670	SRR6706286	Control	405.397
	SRR6706287	Light intensity 50%	427.733
	SRR6706288	Light intensity 20%	424.275
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	684.558
	CNS0095593	Slightly white alabastrum(diploid) 2	648.789
	CNS0095594	Slightly white alabastrum(diploid) 3	669.727
	CNS0095595	Whole white alabastrum(diploid) 2	468.572
	CNS0095596	Whole white alabastrum(diploid) 3	443.292
	CNS0095597	Whole white alabastrum(diploid) 4	366.356
	CNS0095598	Silvery flower (diploied) 1	882.147
	CNS0095599	Silvery flower (diploied) 2	452.902
	CNS0095600	Silvery flower (diploied) 3	505.882
	CNS0095601	Golden flower (diploid) 1	274.330
	CNS0095602	Golden flower (diploid) 2	921.969
	CNS0095603	Golden flower (diploid) 3	927.981
	CNS0095604	Slightly white alabastrum(tetraploid) 1	539.104
	CNS0095605	Slightly white alabastrum(tetraploid) 2	488.618
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1024.157
	CNS0095607	Whole white alabastrum(tetraploid) 1	292.096
	CNS0095608	Whole white alabastrum(tetraploid) 2	205.506
	CNS0095609	Whole white alabastrum(tetraploid) 3	772.063
	CNS0095610	Silvery flower (tetraploid) 1	722.434
	CNS0095611	Silvery flower (tetraploid) 2	362.738
	CNS0095612	Silvery flower (tetraploid) 3	315.834
	CNS0095613	Golden flower (tetraploid) 1	288.402
	CNS0095614	Golden flower (tetraploid) 2	511.923
	CNS0095615	Golden flower (tetraploid) 3	373.031
CRA001975	CRR073297	Stem 1	732.262
	CRR073298	Stem 2	658.340
	CRR073299	Stem 3	747.634
	CRR073300	Leaf 1	528.822
	CRR073301	Leaf 2	522.920
	CRR073302	Leaf 3	563.007
	CRR073303	Juvenile bud 1	513.295
	CRR073304	Juvenile bud 2	521.964
	CRR073305	Juvenile bud 3	484.494
	CRR073306	Third green 1	117.880
	CRR073307	Third green 2	139.040
	CRR073308	Third green 3	172.697
	CRR073309	Second white 1	204.690
	CRR073310	Second white 2	168.494
	CRR073311	Second white 3	152.892
	CRR073312	Silver flowering 1	448.404
	CRR073313	Silver flowering 2	628.379
	CRR073314	Silver flowering 3	607.021
	CRR073315	Gold flowering 1	155.478
	CRR073316	Gold flowering 2	221.393
	CRR073317	Gold flowering 3	180.125
	CRR073318	Tawny withering 1	627.611
	CRR073319	Tawny withering 2	452.366
	CRR073320	Tawny withering 3	747.928