Detail information of GWHGAAZE019186


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_196446.11.7222E-101thioredoxin-like protein YLS8 [Arabidopsis thaliana]
Swissprottr|Q9FE62|YLS8_ARATH8E-104Thioredoxin-like protein YLS8
trEMBLtr|A0A067LES4|A0A067LES4_JATCU1E-101Uncharacterized protein {ECO:0000313|EMBL:KDP42594.1}
TAIR10AT5G08290.12E-81mRNA splicing factor, thioredoxin-like U5 snRNP

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3346001233463304+
GWHAAZE00000005mRNA3346001233463304+
GWHAAZE00000005exon3346001233460131+
GWHAAZE00000005exon3346279633463304+
GWHAAZE00000005CDS3346001233460131+
GWHAAZE00000005CDS3346279633463104+
GWHAAZE00000005three_prime_UTR3346310533463304+
Transcript Sequence

Network for GWHGAAZE019186

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02966.17DIM141361.10E-66
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12859TXNL4A, DIB1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000398biological_processmRNA splicing, via spliceosome
GO:0046540cellular_componentU4/U6 x U5 tri-snRNP complex

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.679
SRR3591706second leaf16.439
SRR3591707mature leaf15.919
SRR3591708Shoot apex32.886
SRR3591709Stem43.949
SRR3591710White floral bud7.735
SRR3591711White flower11.895
SRR3591712Green floral bud17.209
SRR3591713Yellow flower23.766
SRP173429 SRR8316895Juvenile bud stage 67.536
SRR8316896Juvenile bud stage 109.087
SRR8316897Juvenile bud stage 15.858
SRR8316894Third green stage 32.712
SRR8316900Third green stage 114.699
SRR8316901Third green stage 92.923
SRR8316898Complete white stage 49.354
SRR8316899Complete white stage 126.344
SRR8316903Complete white stage 76.846
SRR8316902Silver flowering stage61.790
SRR8316904Silver flowering stage55.056
SRR8316905Silver flowering stage37.889
SRR8316906Gold flowering stage 106.654
SRR8316907Gold flowering stage 126.683
SRR8316908Gold flowering stage 41.803
SRP132670SRR6706286Control110.586
SRR6706287Light intensity 50%108.152
SRR6706288Light intensity 20%107.871
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1149.709
CNS0095593Slightly white alabastrum(diploid) 2147.601
CNS0095594Slightly white alabastrum(diploid) 3142.329
CNS0095595Whole white alabastrum(diploid) 2132.384
CNS0095596Whole white alabastrum(diploid) 3142.798
CNS0095597Whole white alabastrum(diploid) 4132.940
CNS0095598Silvery flower (diploied) 1145.801
CNS0095599Silvery flower (diploied) 2188.086
CNS0095600Silvery flower (diploied) 3190.034
CNS0095601Golden flower (diploid) 1214.041
CNS0095602Golden flower (diploid) 2154.810
CNS0095603Golden flower (diploid) 3149.731
CNS0095604Slightly white alabastrum(tetraploid) 194.410
CNS0095605Slightly white alabastrum(tetraploid) 295.771
CNS0095606Slightly white alabastrum(tetraploid) 3112.883
CNS0095607Whole white alabastrum(tetraploid) 180.589
CNS0095608Whole white alabastrum(tetraploid) 265.781
CNS0095609Whole white alabastrum(tetraploid) 385.506
CNS0095610Silvery flower (tetraploid) 180.065
CNS0095611Silvery flower (tetraploid) 2127.302
CNS0095612Silvery flower (tetraploid) 3100.946
CNS0095613Golden flower (tetraploid) 174.781
CNS0095614Golden flower (tetraploid) 268.578
CNS0095615Golden flower (tetraploid) 3138.261
CRA001975CRR073297Stem 192.064
CRR073298Stem 294.667
CRR073299Stem 3125.787
CRR073300Leaf 188.295
CRR073301Leaf 2117.162
CRR073302Leaf 3149.355
CRR073303Juvenile bud 1169.005
CRR073304Juvenile bud 2132.656
CRR073305Juvenile bud 3135.409
CRR073306Third green 1102.041
CRR073307Third green 2122.811
CRR073308Third green 3107.283
CRR073309Second white 1176.096
CRR073310Second white 2105.978
CRR073311Second white 369.777
CRR073312Silver flowering 174.723
CRR073313Silver flowering 294.585
CRR073314Silver flowering 363.282
CRR073315Gold flowering 190.597
CRR073316Gold flowering 276.425
CRR073317Gold flowering 377.624
CRR073318Tawny withering 1115.000
CRR073319Tawny withering 288.602
CRR073320Tawny withering 389.559