Gene detail

Detail information of GWHGAAZE019121

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002280673.1	PREDICTED: shaggy-related protein kinase alpha [Vitis vinifera]
Swissprot	tr\|P43288\|KSG1_ARATH	Shaggy-related protein kinase alpha
trEMBL	tr\|A0A068V400\|A0A068V400_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_96 {ECO:0000313\|EMBL:CDP15204.1}
TAIR10	AT5G26751.1	shaggy-related kinase 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	32206533	32213229	+
GWHAAZE00000005	mRNA	32206533	32213229	+
GWHAAZE00000005	exon	32206533	32206631	+
GWHAAZE00000005	exon	32206741	32206833	+
GWHAAZE00000005	exon	32208177	32208236	+
GWHAAZE00000005	exon	32208399	32208620	+
GWHAAZE00000005	exon	32208700	32208732	+
GWHAAZE00000005	exon	32209520	32209582	+
GWHAAZE00000005	exon	32210066	32210140	+
GWHAAZE00000005	exon	32210620	32210676	+
GWHAAZE00000005	exon	32210835	32210975	+
GWHAAZE00000005	exon	32211060	32211110	+
GWHAAZE00000005	exon	32211728	32211823	+
GWHAAZE00000005	exon	32212467	32212550	+
GWHAAZE00000005	exon	32212933	32213035	+
GWHAAZE00000005	exon	32213147	32213229	+
GWHAAZE00000005	CDS	32206533	32206631	+
GWHAAZE00000005	CDS	32206741	32206833	+
GWHAAZE00000005	CDS	32208177	32208236	+
GWHAAZE00000005	CDS	32208399	32208620	+
GWHAAZE00000005	CDS	32208700	32208732	+
GWHAAZE00000005	CDS	32209520	32209582	+
GWHAAZE00000005	CDS	32210066	32210140	+
GWHAAZE00000005	CDS	32210620	32210676	+
GWHAAZE00000005	CDS	32210835	32210975	+
GWHAAZE00000005	CDS	32211060	32211110	+
GWHAAZE00000005	CDS	32211728	32211823	+
GWHAAZE00000005	CDS	32212467	32212550	+
GWHAAZE00000005	CDS	32212933	32213035	+
GWHAAZE00000005	CDS	32213147	32213229	+

Transcript Sequence
>GWHTAAZE019143 ATGGCTTCAGTGGGGGTAGTGCCTACTTCTAGCGGCCATACTGTTGGGGTGGATAGGTTGCCTGAAGAGATGAATGAGATGAAAATTAGGGACGATAAGGATATGGAACCCACAGTTGTCGATGGCAATGGGACAGAGACTGGTCATATAATAGTGACAACTATTGGTGGTCGGAATGGCCAGCCAAAGCAGACTATCAGTTACATGGCTGAGCGAGTTGTTGGACATGGATCATTTGGAGTTGTCTTCCAGGACAAGAGATACAAGAACCGGGAGTTGCAAACTATGCGCCTACTTGACCACCCGAATGTTGTGGCTTTGAAGCACTGTTTCTTCTCCACAACCGAGAAGGACGAACTTTATCTTAATCTGGTACTTGAGTATGTACCAGAAACTGTTCATCGTGTAATCAAGCACTATAATAAGTTAAGTCAAAGGATGCCACTCATAAATGTGAAGTTGTATACATATCAGTGTCTGAAATCTGTGCAATTCATTGTTTTAGTGCTCTCTGTCCAACTCTTGGTTACTCTGGACCTTAGGTGGAGTGGTAGTTGTGATTCTGGTGGGATTTTCAGGGCATTGTCTTACATTCATCGCAGTATTGGTGTTTGTCACAGGGATATCAAGCCTCAAAATCTTTTGGTGAATCCACATACTCACCAACTTAAACTATGCGACTTTGGAAGCGCTAAAGTTTTGGTAAAAGGGGAGCCCAATATTTCATACATATGTTCTAGGTATTATAGAGCTCCTGAGCTTATATTTGGAGCAACCGAGTATACTACAGCTATTGATATCTGGTCTGCTGGCTGTGTTCTTGCTGAGCTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTTGTTGAGATTATCAAGGTTTTGGGTACTCCAACGAGGGAGGAAATTAAATGCATGAACCCTAACTACACTGAGTTCAAATTTCCACAAATAAAAGCTCATCCTTGGCACAAGATATTCCACAAGCGCATGCCTCCAGAAGCTGTTGATCTTGTTTCAAGACTGCTGCAATACTCCCCTAACTTACGATGCACGGCTTTGGATGCATTGACCCACTCCTTTTTCGACGAATTACGGGATCAGAACGTTAGGCTGCCAAATGGGCGCTTTCTCCCCCCTCTATTCAACTTTAAGCCTCATGAGCTTAAAGGGGTACCAATGGAAACTATAACGAAATTGATCCCCGAGCACGCTAGAAAGCAATGCCCCTTCCTAGGGTTATGA

Network for GWHGAAZE019121

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	191	367	6.00E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_GSK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	195.583
	SRR3591706	second leaf	93.910
	SRR3591707	mature leaf	95.568
	SRR3591708	Shoot apex	109.688
	SRR3591709	Stem	206.123
	SRR3591710	White floral bud	198.395
	SRR3591711	White flower	183.886
	SRR3591712	Green floral bud	169.577
	SRR3591713	Yellow flower	194.720
SRP173429	SRR8316895	Juvenile bud stage	82.646
	SRR8316896	Juvenile bud stage	112.274
	SRR8316897	Juvenile bud stage	53.169
	SRR8316894	Third green stage	47.994
	SRR8316900	Third green stage	158.133
	SRR8316901	Third green stage	148.293
	SRR8316898	Complete white stage	107.254
	SRR8316899	Complete white stage	259.991
	SRR8316903	Complete white stage	162.055
	SRR8316902	Silver flowering stage	82.110
	SRR8316904	Silver flowering stage	123.002
	SRR8316905	Silver flowering stage	59.424
	SRR8316906	Gold flowering stage	188.120
	SRR8316907	Gold flowering stage	148.557
	SRR8316908	Gold flowering stage	188.207
SRP132670	SRR6706286	Control	186.012
	SRR6706287	Light intensity 50%	180.764
	SRR6706288	Light intensity 20%	180.423
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	83.360
	CNS0095593	Slightly white alabastrum(diploid) 2	81.233
	CNS0095594	Slightly white alabastrum(diploid) 3	70.758
	CNS0095595	Whole white alabastrum(diploid) 2	84.467
	CNS0095596	Whole white alabastrum(diploid) 3	79.871
	CNS0095597	Whole white alabastrum(diploid) 4	74.544
	CNS0095598	Silvery flower (diploied) 1	125.480
	CNS0095599	Silvery flower (diploied) 2	117.384
	CNS0095600	Silvery flower (diploied) 3	248.613
	CNS0095601	Golden flower (diploid) 1	115.373
	CNS0095602	Golden flower (diploid) 2	252.770
	CNS0095603	Golden flower (diploid) 3	242.791
	CNS0095604	Slightly white alabastrum(tetraploid) 1	91.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	72.490
	CNS0095606	Slightly white alabastrum(tetraploid) 3	187.029
	CNS0095607	Whole white alabastrum(tetraploid) 1	63.271
	CNS0095608	Whole white alabastrum(tetraploid) 2	62.309
	CNS0095609	Whole white alabastrum(tetraploid) 3	132.218
	CNS0095610	Silvery flower (tetraploid) 1	236.419
	CNS0095611	Silvery flower (tetraploid) 2	253.502
	CNS0095612	Silvery flower (tetraploid) 3	188.447
	CNS0095613	Golden flower (tetraploid) 1	170.983
	CNS0095614	Golden flower (tetraploid) 2	247.423
	CNS0095615	Golden flower (tetraploid) 3	315.316
CRA001975	CRR073297	Stem 1	109.594
	CRR073298	Stem 2	104.217
	CRR073299	Stem 3	101.732
	CRR073300	Leaf 1	135.849
	CRR073301	Leaf 2	121.918
	CRR073302	Leaf 3	106.238
	CRR073303	Juvenile bud 1	134.311
	CRR073304	Juvenile bud 2	132.664
	CRR073305	Juvenile bud 3	174.623
	CRR073306	Third green 1	129.650
	CRR073307	Third green 2	108.495
	CRR073308	Third green 3	114.598
	CRR073309	Second white 1	92.219
	CRR073310	Second white 2	78.141
	CRR073311	Second white 3	68.594
	CRR073312	Silver flowering 1	54.868
	CRR073313	Silver flowering 2	61.857
	CRR073314	Silver flowering 3	51.343
	CRR073315	Gold flowering 1	57.534
	CRR073316	Gold flowering 2	66.280
	CRR073317	Gold flowering 3	58.723
	CRR073318	Tawny withering 1	114.901
	CRR073319	Tawny withering 2	103.798
	CRR073320	Tawny withering 3	109.050